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  • March 12, 2010
  • 12:00 PM
  • 71 views

The (empirical) rule of 8%

by Pablo Artal in Optics confidential

Some advice on how to deal with students and postdocs...... Read more »

Perez, G., Archer, S., & Artal, P. (2009) Optical Characterization of Bangerter Foils. Investigative Ophthalmology , 51(1), 609-613. DOI: 10.1167/iovs.09-3726  

  • March 4, 2010
  • 06:43 PM
  • 57 views

Will the Moon mess up a moon-base?

by Emma in we are all in the gutter


If we want to build a permanent base on the Moon – and the question of whether we ever will (or even should) remains very open – we need to have some idea of the effect the lunar environmental conditions will have on our equipment. There’s no point going to all [...]... Read more »

T. W. Murphy, Jr., E. G. Adelberger, J. B. R. Battat, C. D. Hoyle, R. J. McMillan, E. L. Michelsen, R. Samad, C. W. Stubbs, & H. E. Swanson. (2010) Long-term degradation of optical devices on the moon. Icarus. arXiv: 1003.0713v1

  • February 26, 2010
  • 05:11 AM
  • 74 views

Certain death: Not risky. Uncertain death: risky.

by Jan Husdal in Supply Chain Risk Research & Literature Review

If you know for sure that things will go wrong, there really is no risk. If you don’t know for sure that things will go wrong, then there is a risk. That’s the basic assumption in a paper I just read. It may sound like a bold statement, but technically speaking, it is a true [ ... ]... Read more »

  • February 20, 2010
  • 11:32 AM
  • 49 views

Risk Analysis of Critical Infrastructures

by Jan Husdal in Supply Chain Risk Research & Literature Review

The vulnerability of critical infrastructures is a recurring theme on this blog, and today’s article has been on my mind for a while. What I like about Critical infrastructures at risk: A need for a new conceptual approach and extended analytical tool by Wolfgang Kröger is how it couples critical infrastructures, showing how one is [ ... ]... Read more »

  • February 18, 2010
  • 07:00 AM
  • 91 views

Chromatic aberration of the eye: to correct or not to correct?

by Pablo Artal in Optics confidential

The human eye suffers of a very large chromatic aberration. This means that when a red object is in focus, a blue one at the same distance will be clearly out of focus. Why we are not yet routinely correcting this defect to improve vision? You will find here some new experiments, results and explanations...... Read more »

  • February 9, 2010
  • 02:40 PM
  • 95 views

Mobile Phones' Impact on Health

by amiya in Physiology physics woven fine

Mobile phones have drastically transformed our lives. Also known as cellular phones or cell phones, these gadgets not only incorporate a phone, as the name suggests, but also a lot of other technologically advanced features. They include a camera, a sound recorder cum music system, a Bluetooth device and many more depending on the model and the maker of the phone. They are called mobile phones since they can be used while on the move.A mobile phone maintains a two way (transmit and receive) comm........ Read more »

Gary W. Arendash, Juan Sanchez-Ramos, Takashi Mori, Malgorzata Mamcar, Xiaoyang Lin, Melissa Runfeldt, Li Wang, Guixin Zhang, Vasyl Sava, Jun Tan.... (2010) Electromagnetic Field Treatment Protects Against and Reverses Cognitive Impairment in Alzheimer's Disease Mice . Journal of Alzheimer's Disease, 191-210. info:/

  • January 31, 2010
  • 08:55 PM
  • 102 views

Un-Natural Disasters

by Bryan in In Terra Veritas

Sergio Mora published a paper in the Journal of the Geological Society (here subscription is required for full text*). This was published back in December 2009, but it took on new (and rather unfortunate) significance in Haiti recently. It is really an excellent paper, he presented something similar as the keynote speaker at the 1st North American Landslide Conference in Vail, CO 2007. My summary doesn't do the paper justice, so I strongly suggest anyone reading this post find a copy of this art........ Read more »

Mora, S. (2009) Disasters are not natural: risk management, a tool for development. Geological Society, London, Engineering Geology Special Publications, 22(1), 101-112. DOI: 10.1144/EGSP22.7  

  • January 15, 2010
  • 08:11 AM
  • 195 views

Bio2RDF: Large Scale, Distributed Biological Knowledge Discovery

by Duncan Hull in O'Really?

Michel Dumontier was visiting the EBI this week, here’s the details of his seminar Bio2RDF and Beyond! Large Scale, Distributed Biological Knowledge Discovery (slides embedded below) for anyone interested who missed it:
Abstract: The Bio2RDF.org [1] project aims to transform silos of bioinformatics data into a distributed platform for biological knowledge discovery. Initial work focused on [...]... Read more »

BELLEAU, F., NOLIN, M., TOURIGNY, N., RIGAULT, P., & MORISSETTE, J. (2008) Bio2RDF: Towards a mashup to build bioinformatics knowledge systems. Journal of Biomedical Informatics, 41(5), 706-716. DOI: 10.1016/j.jbi.2008.03.004  

  • January 8, 2010
  • 09:10 PM
  • 160 views

Mechanistic Insights into Supported Lipid Bilayer Formation

by Michael Long in Phased

Kuchnir Fygenson (University of California, Santa Barbara) and coworkers have gained physical insights relevant towards rendering planar lipid bilayers more useful for practical biological and engineering applications. This news feature was written on January 8, 2010.... Read more »

Weirich, K. L., Israelachvili, J. N., & Fygenson, D. K. (2010) Bilayer Edges Catalyze Supported Lipid Bilayer Formation. Biophysical Journal, 98(1), 85-92. DOI: 10.1016/j.bpj.2009.09.050  

  • December 30, 2009
  • 06:45 AM
  • 177 views

2010, the year when 20/10 vision was promised

by Pablo Artal in Optics confidential

The promise of perfect "20/10" vision for everybody appeared to be a real possibility in the early 2000's. 2010 is already here and your doctor cannot offer you yet supervision...... Read more »

Santamaria, Artal, Bescos. (1987) Determination of the point spread function of human eyes using a hybrid optical-digital method. J.Opt.Soc.Am.A., 1109. info:/

  • December 23, 2009
  • 08:11 AM
  • 200 views

bacteria towing santa's wagon?

by 96well in Reportergene

Bacteria swim in water solution with a random movement resembling brownian motion. Imagine they while impacting randomly on a micro-gear. They will transfer some energy to the gear, but due to random movements the resultant will not provide any directed motion. However, you should remember from physics101 that a principle for the conservation of the force does NOT exist: imagine each tooth of the gear as a lever arm, and do design gears with asymmetric teeth. In this way, bacteria impacting on o........ Read more »

Sokolov, A., Apodaca, M., Grzybowski, B., & Aranson, I. (2009) Swimming bacteria power microscopic gears. Proceedings of the National Academy of Sciences. DOI: 10.1073/pnas.0913015107  

  • December 22, 2009
  • 10:00 PM
  • 191 views

Switchable DNA nanostructures for Energy and Data Storage

by Olexandr Isayev in isayev.info

The Brookhaven team, has been refining techniques to use strands of artificial DNA as a highly specific kind of Velcro or glue to link up nanoparticles. Such DNA-based self-assembly holds promise for the rational design of a range of new materials for applications in molecular separation, electronics, energy conversion, and other fields. But none of these structures has had the ability to change in a programmable manner in response to molecular stimuli — until now. “Now we’re u........ Read more »

  • December 13, 2009
  • 04:00 PM
  • 206 views

Science and politics... and scientists turned politicians

by Pablo Artal in Optics confidential

Some examples and some advice on scientists becoming politicians...... Read more »

Binocular adaptive optics visual simulator. (2009) Binocular adaptive optics visual simulator. Optics Letters. info:/

  • December 10, 2009
  • 01:21 PM
  • 250 views

Blood: Clot, Flow and Slip

by Arunn in Unruled Notebook

By 2020 seventy percent of the heart patients of the World, a study suggests, would be in India. The cause seems genetic. The gene that codes the enzyme called PON1 is defective in Indians and predisposes them to heart ailments and diabetes. Coupled with degenerating lifestyle – eating habits – leads to such a dire [...]... Read more »

  • December 5, 2009
  • 10:34 AM
  • 282 views

Quantifying Research Quality using Article Level Metrics

by Arunn in Unruled Notebook

Quantifying research quality is a buzz-activity in academia for the last two decades. The irony is lost in the paper work. For reasons best left out in this essay, this activity has come to stay in our academics. One such quantifying-quality measure (QQM) evolved recently is the Impact Factor (IF) of journals [1] that publish [...]


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  • November 27, 2009
  • 02:49 AM
  • 287 views

Road Vulnerability

by Jan Husdal in Supply Chain Risk Research & Literature Review

Today we are going back in time, to one of the seminal articles in road vulnerability that has laid the groundwork for many researchers, and has been cited by not few authors since it was first published. It is a conceptual paper that provides the basis for why road vulnerability needs to be a more important issue than it usually is considered as. It is also the first paper to develop a framework for measuring road vulnerability.... Read more »

  • November 18, 2009
  • 12:19 PM
  • 280 views

Why do Toucans have large bill

by Arunn in Unruled Notebook

What can one do with the nose? If one were Cleopatra of Egypt, she could rule Rome. If one were the unfortunate Sphinx of Egypt, his form minus the nose could become the wonderment of the World. If one were Tycho Brahe, he could remove the nose, for polishing amidst a heated debate or duel, [...]... Read more »

  • November 16, 2009
  • 08:42 AM
  • 325 views

A Tale of a Microprocessor, RISC and a Few Loops of miRNA

by AmiyaSarkar in Physiology physics woven fine

The word ‘microprocessor’ is generally used to designate VLSI and SLSI (Very/Super Large Scale Integrated circuits) devices which accept, decode and execute instructions presented in binary coded forms. They may be called the heart of the computer. RISC (Reduced Instruction Set Computer), on the other hand, is a type of microprocessor architecture that uses a simplified, yet highly-optimized set of instructions to deliver good performance. However, like ‘cell’ and ‘nucleus’, they too........ Read more »

  • November 12, 2009
  • 12:10 AM
  • 224 views

A call for new technological minds for the genome sequencing instrument fields

by Keith Robison in Omics! Omics!

There's a great article in the current Nature Biotechnology (alas, you'll need a subscription to read the full text) titled "The challenges of sequencing by synthesis" as this post detailing the challenges around the current crop of sequencing-by-synthesis instruments. The paper was written by a number of the PIs on grants for $1K genome technology.While there is one short section on the problem of sample preparation, the heart of the paper can be found in the other headings: surface chemistryf........ Read more »

Fuller CW, Middendorf LR, Benner SA, Church GM, Harris T, Huang X, Jovanovich SB, Nelson JR, Schloss JA, Schwartz DC.... (2009) The challenges of sequencing by synthesis. Nature biotechnology, 27(11), 1013-23. PMID: 19898456  

  • November 10, 2009
  • 07:30 PM
  • 244 views

Road Redux

by Roberta Kwok in Journal Watch Online

Ancient Chinese road construction method preserves cliff ecosystems

... Read more »

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