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  • August 10, 2012
  • 12:34 PM

Promoting incompetence

by sedeer in Inspiring Science

From Dilbert’s PHB to The Office, the incompetent manager is such a popular trope that it’s in danger of becoming …Continue reading »... Read more »

Alessandro Pluchino, Andrea Rapisarda, & Cesare Garofalo. (2009) The Peter Principle Revisited: A Computational Study. Physica A 389 (2010) 467-472. arXiv: 0907.0455v3

  • August 9, 2012
  • 04:47 PM

Building the tallest sandcastle

by Cath in Basal Science (BS) Clarified

The Canadian National Exhibition (CNE) opens in Toronto next Friday (can’t wait!) and they hold an international sand sculpting competition every year. I’m always impressed by the size and detail [...]... Read more »

Pakpour M, Habibi M, Møller P, & Bonn D. (2012) How to construct the perfect sandcastle. Scientific reports, 549. PMID: 22870378  

  • August 9, 2012
  • 11:00 AM

RULETOOL v2: L-systems and turtle graphics

by Alejandro Mosquera in amsqr

An L-system or Lindenmayer system is a parallel rewriting system, namely a variant of a formal grammar.I have implemented a simple L-system class with HTML5 Canvas or WebGL output. Feel free to explore the predefined models or create your own.... Read more »

Przemyslaw Prusinkiewicz, Aristid Lindenmayer. (1990) The Algorithmic Beauty of Plants. Springer-Verlag. pp. 101–107. DOI: 10.1016/S0168-9452(96)04526-8  

  • August 9, 2012
  • 02:14 AM

“The beetle shows us how”

by Perikis Livas in Tracing Knowledge

Insects are experts when it comes to adhesion on dry surfaces. However, in nature, plants may be covered by water for quite a long period of time, especially after rain. The bionic expert Professor Stanislav Gorb of Kiel University, Germany, and the material scientist Professor Naoe Hosoda of the National Institute for Material Science in Japan, discovered the remarkable ability of the terrestrial leaf beetle to walk underwater. Picking up the beetle’s locomotion mechanism, they designed an artificial material, which sticks to surfaces underwater. Their scientific results are published today (8th August) in the online journal “Proceedings of the Royal Society B”.... Read more »

Kiel University Press, Text: Claudia Eulitz, & Translation: Ann-Christin Wimber. (2012) “The beetle shows us how”. Proceedings of the Royal Society B . info:/

  • August 7, 2012
  • 10:13 AM

The Adventures of Ned the Neuron!

by Bradley Voytek in Oscillatory Thoughts

I've been itching to announce this for months, but I've been biting my tongue. Now I can finally let the neuron out of the bag.Ladies and gentlemen I'm proud to introduce to you a joint project between my wife Jessica Voytek and our friend Erica Warp: The Adventures of Ned the Neuron! To get the important pitch out of the way first, please go contribute some money to their Kickstarter campaign to help them get started if you want to help. Also, please consider following their company on Facebook. I promise they're not spammy.For several months now Jessica and Erica have been working on their company, Kizoom, to develop the first of what I hope to be many science education eBooks for kids. The fact that this is being built using open or semi-open tools and platforms is also pretty amazing.Note that I'm in no way connected to this company, though the obvious disclosure is that my wife and I are financially entwined and, as unbiased as I try to be, I of course cannot be completely so. I mean, I'm writing this post, aren't I? But... as a new father I'm coming to appreciate more and more the joys of well-written, scientifically accurate educational materials.So who are Erica and Jessica and why should you trust what they write?Erica earned her PhD in neuroscience from Berkeley working on spinal cord development. She published three super cool papers during that time, one each in Nature, PNAS, and Current Biology. I promise you she knows her brains.Jessica is the primary author on our brainSCANr paper which we published in The Journal of Neuroscience Methods earlier this year. She earned her Masters degree in Information Management and Systems at Berkeley, which she completed while very pregnant with our son. Not only does she know her brains, she's also technically and artistically very savvy.The two of them have been working hard on this baby of theirs (that's them celebrating after submitting their NIH grant). They have managed to put together a book that is fun and interactive for kids (their target audience) while being educational and totally neuroscientifically accurate.No neuro nonsense. Just good science and good fun.So many of us neuroscientists complain about the poor public understanding of our field that it's time for us to stop being critics and start trying to make the changes we want to see. And that's what I love about Kizoom and The Adventures of Ned the Neuron: two very smart neuroscientists and techies are putting themselves forward and trying to make science more approachable to the most scientifically vulnerable group.Kids.Erica wrote the story and drew the early artwork while Jessica has been working on getting the whole thing coded up, animated, etc. Basically the techy nerd work.What's impressed me the most is that, throughout all of this had work, they've also been doing a lot of science outreach and communication for kids. Jessica worked for the Girl Scouts for years, including developing a cookie booth finder to help people locate the nearest Girl Scout troop selling cookies in their area!In May Jessica and Erica volunteered at a Girl Scout event to teach young women about neuroscience and the brain with the help of Ned the Neuron!We also recently learned that, out of the thousands of abstracts and poster submissions to the Society for Neuroscience Conference this October, their poster "User experience design for children's neuroscience education" has been selected as one of nine in the new "Dynamic Posters" session.What's that? Well, according to the email they received,A dynamic poster is an electronic version of the current paper-based format, displayed on an LCD screen rather than a poster board. However, it’s more than just an e-poster, which is typically an electronic - but still static - PDF version of a paper poster. Embedding multimedia content is encouraged such as videos, slides, animated charts or graphs, scrolling text, or a 3D rotation of a model. A dynamic poster presentation is designed for face-to-face interaction: like a regular poster presentation, the dynamic presentation will be driven by the primary author while attendees visit the poster. Some text elements of the poster will always be viewable for browsing by people walking by or waiting for their turn to speak with the presenter. Other parts of the poster will be operated by the presenter, who can click on and play a video or enlarge a graph to better illustrate a method or result.I definitely applaud the Society for Neuroscience for finally taking this kind of tech-based approach.I wish I could convey to you in words the emotional love the both of them have for this project. I'm really proud to have seen it grow from nothing into a nearly completed project. Please check it out and consider helping if you can.Thanks everyone.Voytek JB, & Voytek B (2012). Automated cognome construction and semi-automated hypothesis generation. Journal of neuroscience methods, 208 (1), 92-100 PMID: 22584238Warp E, Agarwal G, Wyart C, Friedmann D, Oldfield CS, Conner A, Del Bene F, Arrenberg AB, Baier H, & Isacoff EY (2012). Emergence of patterned activity in the developing zebrafish spinal cord. Current biology : CB, 22 (2), 93-102 PMID: 22197243... Read more »

Warp E, Agarwal G, Wyart C, Friedmann D, Oldfield CS, Conner A, Del Bene F, Arrenberg AB, Baier H, & Isacoff EY. (2012) Emergence of patterned activity in the developing zebrafish spinal cord. Current biology : CB, 22(2), 93-102. PMID: 22197243  

Marriott G, Mao S, Sakata T, Ran J, Jackson DK, Petchprayoon C, Gomez TJ, Warp E, Tulyathan O, Aaron HL.... (2008) Optical lock-in detection imaging microscopy for contrast-enhanced imaging in living cells. Proceedings of the National Academy of Sciences of the United States of America, 105(46), 17789-94. PMID: 19004775  

Wyart C, Del Bene F, Warp E, Scott EK, Trauner D, Baier H, & Isacoff EY. (2009) Optogenetic dissection of a behavioural module in the vertebrate spinal cord. Nature, 461(7262), 407-10. PMID: 19759620  

  • August 3, 2012
  • 03:47 AM

Where did all the BBC programme metadata go? The infax catalogue online

by Duncan Hull in O'Really?

Over at @BBCSport and @BBC2012 there are some Olympian feats of big data wrestling going on behind the scenes for London 2012 [1]. While we all enjoy the Olympics on a range of platforms and devices, a team of twenty engineers is busy making it all happen. It’s great that the BBC, unlike other large organisations, can talk openly about their technology and share hard-won knowledge widely.... Read more »

  • August 1, 2012
  • 01:48 AM

Holistic Design Factors in Space Colonies

by Jason Carr in Wired Cosmos

Assuming that we never achieve FTL travel, generational colony ships may become a necessary method used to traverse great distances. Inherent in the term generational, individuals will live their entire lives on these massive spaceships as will their descendants. In other words, these space ships will be the only home many generations of inhabitants will [...]... Read more »

Apostolos Papanikolaou. (2010) Holistic ship design optimization . Computer-Aided Design, 42(11), 1028-1044. info:/10.1016/j.cad.2009.07.002

Cooper RA. (2008) Quality-of-life technology. A human-centered and holistic design. IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine , 27(2), 10-1. PMID: 18472458  

  • July 31, 2012
  • 06:25 PM

Who should make the first move?

by eHarmony Labs in eHarmony Labs Blog

When it comes to online dating, who should make the first move? You or them? ... Read more »

  • July 27, 2012
  • 03:36 PM

Capturing carbon dioxide emissions

by Cath in Basal Science (BS) Clarified

You may already be familiar with various technologies that minimize the generation of carbon dioxide (CO2) emissions like hybrid-electric vehicles, biodegradable plastics, or even solar panels. But what happens when [...]... Read more »

Yasutaka Kuwahara, Dun-Yen Kang, John R. Copeland, Nicholas A. Brunelli, Stephanie A. Didas, Praveen Bollini, Carsten Sievers, Takashi Kamegawa, Hiromi Yamashita, & Christopher W. Jone. (2012) Dramatic Enhancement of CO2 Uptake by Poly(ethyleneimine) Using Zirconosilicate Supports. J. Am. Chem. Soc. DOI: 10.1021/ja303136e  

  • July 27, 2012
  • 11:58 AM

Cell Phone Anxiety: Extended Edition

by Mitchell Harden in Mitch's Blog

Yesterday I posted some research about cell phone anxiety. You may have noticed that while I referenced a science journal article I didn't talk much about the results. Indeed, the only results I listed were descriptive (basic counting that describes a behavior) and qualitative (as opposed to quantitative). This is because of some fundamental flaws with the data as described in the article. So for those of you interested in such things here is the extended review enumerating three big problems I had with the data:Sampling Error. The author state that they began with 47 participants but 24 had dropped out or otherwise been disqualified before the start of the experiment.  The problem is we can't be sure if there was some other extraneous variable contributing to the high attrition rate. For example, if those 24 dropped out because the idea of being without their cell phone for 3 or 5 days was too threatening then the study missed the opportunity to measure their anxiety. Or maybe not. The thing is that we don't, and can't, know the  possible confound of the sample selection. Median Split. The authors used a median split (M=92) to determine high- vs low- texting participants. The problem here is that someone with 91 texts per day is in one group while someone with 93 is in another. Sure the line has to be drawn somewhere, but when you have a small sample size, it is hard to distinguish the difference between groups with a median split, especially if data is clustered near the median (although we don't know if that was the case here). A better solution might be to use thirds so you have a high-, moderate, and low-texting groups, which might lead to more meaningful comparisons between high- and low-.Low Sample Size. Of course this is the big one. With only 23 participants stretched across four groups there simply is not enough data for meaningful statistical analysis, not with humans anyway. When doing animal research your samples are so homogeneous (there is little individual difference between rats) that you can get away with small sample sizes. In fact to do regression the rule of thumb I'd always heard was that you'd need at least 60 per group. That might be hard to get for some researchers and there are statistical tricks that get used (like bootstrapping) to work around that number. But for this study, the sample is just way to small and, to be fair, the authors acknowledge this in the discussion.That said the  lit review and theory in the paper were good. Some of the descriptive and qualitative results were interesting. So while statistically almost meaningless, I feel as though the paper is still a valuable contribution to the relatively barren landscape of research into cell phone restriction anxiety. Dorothy Skierkowski & Rebecca M. Wood (2012). To text or not to text? The importance of text messaging among college-aged youth Computers in Human Behavior, 28 (2), 744-756 DOI: 10.1016/j.chb.2011.11.023... Read more »

  • July 26, 2012
  • 01:54 PM

Cell Phone Anxiety

by Mitchell Harden in Mitch's Blog

Earlier I wrote about cell phone rudeness in the classroom. In that post I mentioned that asking students to go without cell phones is like asking them to go without friends. That statement generated a lot of interest from faculty and students int he comments, on facebook, and in person so I thought I would share a little bit of research that backs up my statement.In a recently published article (see below for reference) Dorothy Skierkowski and Rebecca Wood tracked college-aged youth's anxiety over a 3- or 5-day texting restriction. That is to say, for three or five days participants in the study were not allowed to use text messaging. In spite of the studies extremely small sample size (n=23), they had some interesting results. They found that participants that were identified has high-volume texters (greater than 92 texts per day on average) thought about texting an average of 47 times per day during the restricted period. Even the low-volume texters thought about it 23 times on average. In psychology we might consider those repetitive worrisome thoughts as rumination, a hallmark of anxiety.Another important finding from this study involved the open-ended survey responses from students collected during the restriction. The authors sum those responses with the following sentence: "Clearly, asking students to restrict their texting behavior made a powerful impact on most study participants, to the extent that some were not able to refrain from doing so, a large number believed their relationships had worsened over the duration of the study, and most endured the effects of texting restriction with a moderate to high degree of annoyance, anxiety, and/or stress. "So it is because of this and similar studies that I think we need to review the idea of the cell-phone ban in the classroom setting. While this study involved restricted use over a matter of days, it was still observed that students frequently thought about texting and failed to comply with text-messaging restrictions. So my fear is that banning cell phones might be just as detrimental to learning as allowing them in class. I decided to do my own experiment to gather data on how cell phones impact learning in MY classroom. I let you know how that turned out in a future post.Dorothy Skierkowski & Rebecca M. Wood (2012). To text or not to text? The importance of text messaging among college-aged youth Computers in Human Behavior, 28 (2), 744-756 DOI: 10.1016/j.chb.2011.11.023... Read more »

  • July 25, 2012
  • 03:30 PM

Red-Eyed Rump Shaker

by Miss Behavior in The Scorpion and the Frog

A photo of a red-eyed treefrog taken by Carey James Balboa at Wikimedia.At night, male red-eyed treefrogs gather on saplings over Central American forest ponds to show off their stuff for the ladies, producing self-advertising “chack” calls. Despite the fact that they gather in groups, they defend their calling territories from flirtatious male competition. Females assess the available males and usually mate with a single male, who mounts her and clings on for dear life in a behavior called amplexus until she lays eggs that he then fertilizes. Occasionally, multiple males will try to mate with the same female at the same time, which usually results in two ticked-off male frogs. What does an angry red-eyed treefrog do, you may ask? A mildly irritated treefrog will likely produce territorial “chuckle” calls, to let rivals know this is his favorite calling-plant and they’d better step-off. But a really ticked-off red-eyed treefrog rapidly lifts and lowers his hind end in a behavior called tremulation.   "Step off, I'm doing the hump!" Video by Michael Caldwell. Not much is known about this tremulation behavior. Is it something they do just to release anxiety or is it a communication signal? If it is a communication signal, is it a visual signal or a vibrational signal or both? And what exactly might it communicate?Michael Caldwell, Karen Warkentin and Gregory McDaniel from Boston University, and Gregory Johnston from Flinders University in Australia, set out to ask the red-eyed treefrog if the tremulations were a communication signal and what they may mean. But without Dr. Doolittle’s powers of talking to the animals, how can scientists determine what and how animals are communicating?First, the researchers observed natural interactions between males at choruses in the wild and recorded everything they did. They found that male red-eyed treefrogs will often approach another male while making “chuckles” and “chacks”. These males also tremulated in every aggressive interaction observed. Some of these males kicked with their back legs and some encounters even escalated to wrestling. Eventually (usually anywhere from a minute to an hour later, but occasionally several hours later), one of the males would submit by fleeing the plant or remaining silent and motionless. The dominant male would then resume his self-advertising “chack” calls. So males use tremulation in aggressive contexts with other males, but does that mean that it is a signal?Males that won encounters tremulated more and used more "chack" and "chuckle" calls than did males that lost encounters. Figure from Caldwell et al. 2010 Current Biology paper.The researchers then conducted staged contests by placing pairs of calling males on the same sapling. In these staged contests, males showed all the same aggressive behaviors the researchers had observed in natural conditions, and most ended in a wrestling match. The males that won their encounter produced more calls and more tremulations than did males that lost their encounter (Check out the graph above). So tremulations are used in the context of aggression with other males and winners tremulate more than losers. It looks like these tremulations are an aggressive communication signal, but to know for sure, we need to know if other males respond to them. And are tremulations a visual signal, a vibrational signal, or both?So the researchers had to get creative and take it one step further: They put a robotic frog on a vibrating shaker that could mimic the visual display of a tremulation. They attached a separate vibrating shaker to the plant to mimic the vibrations of a tremulation. Now, they could look at the effects of the visual and vibrational components of the tremulation behavior separately!  Robofrog! Notice the jointed limbs and the metal rod sticking out of the robot's belly. That rod is connected to a shaker that moves the robot so it looks like he is performing a tremulation display. A separate shaker is connected to the sapling to send the vibrational component of the display. This way, the researchers can expose frogs to the visual component and the vibrational component of the tremulation display separately. Photo by Michael Caldwell.The researchers compared male red-eyed treefrogs that were exposed to (1) nothing, (2) a frog robot that does nothing, (3) a frog robot that “tremulates” with both plant vibrations and visible movement, (4) “tremulation” vibrations in the plant, without the frog robot, (5) a frog robot that moves it’s butt up and down but doesn’t produce vibrations, and (6) white noise vibrations in the plant (this is just a generic vibration). Males responded aggressively to the imitated tremulation vibrations, visual or combined but not to any of the other treatments. This suggests that tremulations are a communication signal that rival males respond to. Interestingly, males only tremulated in response to tremulation vibrations. This suggests that the vibrational component is important to sending the full aggressive signal.... Read more »

Caldwell MS, Johnston GR, McDaniel JG, & Warkentin KM. (2010) Vibrational signaling in the agonistic interactions of red-eyed treefrogs. Current biology : CB, 20(11), 1012-7. PMID: 20493702  

  • July 24, 2012
  • 06:27 AM

Buddy-cops! Why evolution favours the odd couple

by John Ankers in Too Many Live Wires

Inside our cells, the battle with viruses has a lot in common with 1980s action-comedy Lethal Weapon. Both feature an unlikely pair of heroes. Each partnership - proteins and LA cops alike - has a reliable, straight-laced, by-the-book one and a loose canon, maverick one.

New research suggests that whether they're crime fighting or fighting an infection, the odd couple always gets the job done.... Read more »

Ratushny AV, Saleem RA, Sitko K, Ramsey SA, & Aitchison JD. (2012) Asymmetric positive feedback loops reliably control biological responses. Molecular systems biology, 577. PMID: 22531117  

  • July 23, 2012
  • 09:30 PM

Programming playground: A whole-cell computational model

by Artem Kaznatcheev in Evolutionary Games Group

Three days ago, Jonathan R. Karr, Jayodita C. Sanghvi and coauthors in Markus W. Covert’s lab published a whole-cell computational model of the life cycle of the human pathogen Mycoplasma genitalium. This is the first model of its kind: they track all biological processes such as DNA replication, RNA transcription and regulation, protein synthesis, metabolism [...]... Read more »

Karr, J.R., Sanghvi, J.C., Macklin, D.N., Gutschow, M.V., Jacobs, J.M., Bolival, B., Assad-Garcia, N., Glass, J.I., & Covert, M.W. (2012) A whole-cell computational model predicts phenotype from genotype. Cell, 389-401. DOI: 10.1016/j.cell.2012.05.044  

  • July 19, 2012
  • 11:00 AM

Detecting Unhealthy Regions in Leaf Images Pixel by Pixel

by Alejandro Mosquera in amsqr

A pixel by pixel method has been proved useful to detect unhealthy regions using leaf images. For this reason I have implemented a pixel by pixel algorithm in order to detect damaged leaf sections and to calculate leaf area in pixels.... Read more »

Pérez Rodríguez F., Camino Saco A., Mendes Lopes D.M., Rojo Alboreca A., Gómez García E. (2012) SCANNING LEAVES ALGORITHM BASED IN “RGB PIXEL BY PIXEL” METHOD. Proceedings of V European Congress of Methodology. info:/

  • July 18, 2012
  • 01:00 AM

Simulated Solutions for Real Problems

by Jason Carr in Wired Cosmos

The way that people look at mathematical statistics is changing. Statistics show up in the news media left and right. People probably view graphs on a daily basis. They’re becoming desensitized to data. However, statistics will be one of the most important aspects of communication in the future. Statistics can actually allow us to predict [...]... Read more »

John W. Tukey. (1967) The Future of Data Analysis. The Annals of Mathematical Statistics, 33(1), 1-67. info:/10.1214/aoms/1177704711

  • July 16, 2012
  • 03:19 PM

Building a better RoboCop

by Bradley Voytek in Oscillatory Thoughts

This week marks the 25th(!) anniversary of RoboCop, one of the hallmarks of 1980s US cinema and hero of Detroit.Detroit's soon-to-be RoboCop statue!This past weekend was also my 15th (or so) year attending Comic-Con. In a row. Because I didn't get to hear about the new RoboCop remake starring Gary Oldman, Samuel L. Jackson, and Hugh Laurie, I decided to celebrate this nerdistry my own way: by talking way to much and overthinking a plate of beans.This is me priming myself to thinking about wild ways of designing brain-computer interfaces (BCI) for my new research projects.Thus, I've decided to take a modern neuroscientific look at RoboCop. Given the huge technological advances in the 25 years since Peter Weller, Miguel Ferrer, and Red Kurtwood Smith, I believe that RoboCop would be much cooler now.So let's play with some probably very unethical human and cognitive enhancement possibilites, shall we?As a quick aside: I just found out that Peter Weller is finishing his PhD in "the history of fifteenth-century Venetian art" at UCLA, with a "minor in Ancient Greek and Roman art". And he plays jazz trumpet in a bebop sextet. Whaaaat?! Awesome.Now I'm not the first one to think about the neuroscientific implications of and possibilities of RoboCop. Apparently Ed Neumeier, writer of the original RoboCop, "was grabbed as a consultant by the US Air Force for a program called 2025. They were trying to re-imagine their role in the future and they wanted me to foster imaginative thinking." Government guys, if you're listening, this isn't legit!Look at this guy! Moral and ethical implications aside, how could you not want to be a bullet-proof, enhanced super cop!? But, cool as he is... he's a little dated. Here's a glimpse into the visual enhancements and HUD-like overlay implanted in RoboCop's nervous system:I'm pretty sure that the Miguel Ferrer overlay is not part of the standard package, but the P39-green font is your only option! We've got processes such as "MEMORY.DAT" and "ROBO UTILS" that are very important pieces of information for your robo-visual inputs.As a neuroscientist, how would I design RoboCop's enhancements... if money and was no object and the subject was totally willing?Mind you, I'm a big proponent of research ethics, so I wouldn't actually do this even if the subject were willing. Seriously. Some of this stuff is dangerous and highly speculative. But this is my place to be wildly speculative, and this is a fun way for me to talk about where the current state-of-the art in BCI stands and maybe poke some holes in the places where our neuroscientific understanding is weakest.Some of the biggest technological advancements in the last 25 years have come from the telecommunications industry. The first thing that popped into my mind was adding a GPS system into RoboCop and giving him a map overlay on top of his vision allowing for augmented reality interfaces.Essentially this would be a beefed-up Google Glass.Imagine integrating this system with something like Word Lens below:Think about how many other things one could do with such a system: alternative computer-aided visual inputs such as UV, IR, etc? Done. Automatic object/threat detection with visual overlays to exogenously capture attention? Not a problem. Draw a green line over your visual field to highlight your GPS-based route to a destination? Easy.We know that taxi drivers who have really learned the layout of their cities have bigger hippocampuses. So the obvious solution is to just inflate RoboCop's hippocampus to the size of a building! Best. Taxi driver. Ever. But really yucky oversized hippocampuses...... Read more »

Maguire EA, Gadian DG, Johnsrude IS, Good CD, Ashburner J, Frackowiak RS, & Frith CD. (2000) Navigation-related structural change in the hippocampi of taxi drivers. Proceedings of the National Academy of Sciences of the United States of America, 97(8), 4398-403. PMID: 10716738  

LaBar, Kevin S, & Cabeza, Roberto. (2006) Cognitive neuroscience of emotional memory. Nature Reviews Neuroscience, 54(1), 233-264. DOI: 10.1038/nrn1825  

Berger TW, Hampson RE, Song D, Goonawardena A, Marmarelis VZ, & Deadwyler SA. (2011) A cortical neural prosthesis for restoring and enhancing memory. Journal of neural engineering, 8(4), 46017. PMID: 21677369  

Talwar SK, Xu S, Hawley ES, Weiss SA, Moxon KA, & Chapin JK. (2002) Rat navigation guided by remote control. Nature, 417(6884), 37-8. PMID: 11986657  

  • July 16, 2012
  • 12:59 PM

More Big Data to Consider: Bioimage Informatics

by Jennifer in OpenHelix

I’m not sure any more when I signed up for complementary copies of Nature Methods, but just like clockwork my copy arrives each month. If you’d like to get it too, you can apply for a subscription here (Firefox seems to work better than IE, btw). This month’s issue particularly interested me because it contains a focus on Bioimage Informatics. [...]... Read more »

Gene Myers. (2012) Why bioimage informatics matters. Nature Methods, 659-660. DOI: 10.1038/nmeth.2024  

Anne E Carpenter, Lee Kamentsky, & Kevin W Eliceiri. (2012) A call for bioimaging software usability. Nature Methods 9, 666-670. DOI: 10.1038/nmeth.2073  

Kevin W Eliceiri, Michael R Berthold, Ilya G Goldberg, Luis Ibáñez, B S Manjunath, Maryann E Martone, Robert F Murphy, Hanchuan Peng, Anne L Plant, Badrinath Roysam.... (2012) Biological imaging software tools. Nature Methods, 697-710. DOI: 10.1038/nmeth.2084  

  • July 15, 2012
  • 11:52 PM

What Makes the Uncanny Valley so Unsettling?

by Eric Horowitz in peer-reviewed by my neurons

Every day we inch closer to the time when intelligent robots will be a part of everyday life. Among the many challenges we must overcome before then is gaining a better understanding of the "uncanny valley" -- the feeling of discomfort we have around humanlike robots. Thus far, most research has tended to focus on robot appearances. For example, there is evidence that humanlike robots are unnerving because their faces remind us of death, have abnormal features, and fail to align with our expectations. Still, the research has been relatively inconclusive and it's failed to uncover a more comprehensive explanation.... Read more »

  • July 11, 2012
  • 09:35 AM

Dark Galaxies of the Early Universe

by Jason Carr in Wired Cosmos

Dark galaxies are small, gas-rich galaxies in the early Universe that are very inefficient at forming stars. They are predicted by theories of galaxy formation and are thought to be the building blocks of today’s bright, star-filled galaxies. Astronomers think that they may have fed large galaxies with much of the gas that later formed [...]... Read more »

Sebastiano Cantalupo, Simon J. Lilly, & Martin G. Haehnelt. (2012) Detection of dark galaxies and circum-galactic filaments fluorescently illuminated by a quasar at z. Monthly Notices of the Royal Astronomical Society. info:/

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