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  • December 8, 2016
  • 10:56 AM
  • 35 views

The Reconstruction of Ships: Sailing the Seas of International Collaboration

by Filipe Castro in United Academics

Working for both public and private institutions, archaeologists constantly construct and deconstruct narratives about our past, but traditionally publish only a fraction of the sites they excavate and thus destroy. Computers and the internet present a vast range of opportunities for archaeologists to share primary data and foster intercultural online collaborations and reinterpretations of archaeological contexts. ... Read more »

Bass, G. (1961) The Cape Gelidonya Wreck: Preliminary Report. American Journal of Archaeology, 65(3), 267. DOI: 10.2307/501687  

  • December 8, 2016
  • 09:14 AM
  • 35 views

What are Hierarchical Orthologous Groups (HOGs)?

by Christophe Dessimoz in Open Reading Frame


One central concept in the OMA project and other
work we do to infer relationships between genes is that of Hierarchical
Orthologous Groups, or “HOGs” for the initiated.

We’ve written several papers on aspects pertaining to HOGs—how to infer
them,
how to evaluate them, they being
increasingly adopted by orthology
resources, etc.—but there is
still a great deal of confusion as to what HOGs are and why they matter.

Natasha Glover, talented postdoc in the lab,........ Read more »

Sonnhammer, E., Gabaldon, T., Sousa da Silva, A., Martin, M., Robinson-Rechavi, M., Boeckmann, B., Thomas, P., Dessimoz, C., & , . (2014) Big data and other challenges in the quest for orthologs. Bioinformatics, 30(21), 2993-2998. DOI: 10.1093/bioinformatics/btu492  

  • December 6, 2016
  • 08:46 AM
  • 70 views

Are American Professors More Responsive to Requests Made by White Male Students?

by Jalees Rehman in The Next Regeneration

The vast majority of professors will gladly meet a prospective graduate student and discuss research opportunities as well as long-term career options, especially if the student requesting the meeting clarifies the goal of the meeting. However, there are cases when students wait in vain for a response. Is it because their email never reached the professor because it got lost in the internet ether or a spam folder? Was the professor simply too busy to respond? A research study headed by Katherine........ Read more »

  • November 30, 2016
  • 01:41 PM
  • 171 views

Open and Post Peer Review: New Trends in Open Access Publications

by Nesru Koroso in United Academics

Among the academic community, there a growing feeling that traditional peer review is failing at accomplishing its core objective: ensuring scientific quality.... Read more »

  • November 29, 2016
  • 01:36 PM
  • 123 views

Open Access article processing charges: a new serial publication crisis?

by SciELO in SciELO in Perspective

The financial and ethical implications that emerge from open access publishing through article processing fees in India are analyzed in a study that proposes the creation of a national open access journal platform such as SciELO in order to reduce costs, increase efficiency and facilitate the sharing of metadata among repositories. … Read More →... Read more »

  • November 21, 2016
  • 11:55 AM
  • 189 views

How did Gall Identify his 27 Faculties?

by The Neurocritic in The Neurocritic





Franz Joseph Gall (1758-1828), a founding father of phrenology


Phrenology was the pseudoscience of identifying a person's character and mental abilities on the basis of skull morphology (“bumps on the head”). The enterprise was based on four assumptions (Gross, 2009):

intellectual abilities and personality traits are differentially developed in each individual
these abilities and traits

... Read more »

  • November 10, 2016
  • 04:09 PM
  • 208 views

Am I An Unethical Pseudonym?

by Neuroskeptic in Neuroskeptic_Discover

I've blogged about my fair share of scientific papers over the years, but this is a new one: a paper about me.



Writing in Science and Engineering Ethics, author Jaime A. Teixeira da Silva discusses the question of Are Pseudonyms Ethical in (Science) Publishing? Neuroskeptic as a Case Study



Teixeira da Silva, a plant scientist and frequent poster on PubPeer amongst other forums, opens with the following:
There is a prominent blogger called Neuroskeptic who has a web-site and even a... Read more »

  • November 4, 2016
  • 09:13 AM
  • 201 views

Study shows that articles published in English attract more citations

by SciELO in SciELO in Perspective

Among the many factors that influence citation practice in scholarly communication, the language of publication plays a key role. A study by Argentine researchers showed that English articles receive more citations than those published in other languages. Despite being perceived by many as of lower quality and relevance, articles in Spanish from two Latin American journals were blind evaluated and were not, in fact, underqualified. … Read More →... Read more »

  • October 30, 2016
  • 04:00 PM
  • 228 views

The science behind real life zombies

by Dr. Jekyll in Lunatic Laboratories

In the spirit of Halloween we bring you the science fact and fiction behind the undead. Zombies, those brain loving little guys, (and girls) are everywhere. Sure, we are all familiar with the classic zombie, but did you know that we aren't the only zombie lovers out there? It turns out that nature has its own special types of zombies, but this isn't a science fiction movie, this is science fact! Sometimes fact can be scarier than fiction, so let's dive in.

... Read more »

Lafferty KD. (2006) Can the common brain parasite, Toxoplasma gondii, influence human culture?. Proceedings. Biological sciences / The Royal Society, 273(1602), 2749-55. PMID: 17015323  

Vyas A, Kim SK, Giacomini N, Boothroyd JC, & Sapolsky RM. (2007) Behavioral changes induced by Toxoplasma infection of rodents are highly specific to aversion of cat odors. Proceedings of the National Academy of Sciences of the United States of America, 104(15), 6442-7. PMID: 17404235  

Thomas, F., Schmidt-Rhaesa, A., Martin, G., Manu, C., Durand, P., & Renaud, F. (2002) Do hairworms (Nematomorpha) manipulate the water seeking behaviour of their terrestrial hosts?. Journal of Evolutionary Biology, 15(3), 356-361. DOI: 10.1046/j.1420-9101.2002.00410.x  

W. Wesołowska T. Wesołowski. (2014) Do Leucochloridium sporocysts manipulate the behaviour of their snail hosts?. Journal of Zoology , 292(3), 151-155. info:/10.1111/jzo.12094

  • October 24, 2016
  • 01:42 PM
  • 229 views

Study uncovers brain changes in offending pedophiles

by Dr. Jekyll in Lunatic Laboratories

New research reveals that certain alterations in the brain may be present in pedophiles, with differences between hands-on offenders and those who have not sexually offended against children.

... Read more »

  • October 20, 2016
  • 01:51 PM
  • 237 views

Oligodendrocyte selectively myelinates a particular set of axons in the white matter

by Dr. Jekyll in Lunatic Laboratories

There are three kinds of glial cells in the brain, oligodendrocyte, astrocyte and microglia. Oligodendrocytes myelinate neuronal axons to increase conduction velocity of neuronal impulses. A Japanese research team found a characteristic feature of oligodendrocytes that selectively myelinate a particular set of neuronal axons.

... Read more »

  • October 20, 2016
  • 01:00 PM
  • 222 views

Is the reproducibility crisis exacerbated by pre-publication peer review?

by SciELO in SciELO in Perspective

A lack of scrutiny of articles published in peer-reviewed journals on the basis of a belief that pre-publication peer-review provides sufficient scrutiny, may well add to the relatively high number of articles in which results are presented that cannot be replicated. … Read More →... Read more »

  • October 17, 2016
  • 02:01 PM
  • 237 views

Cold medicine could stop cancer spread

by Dr. Jekyll in Lunatic Laboratories

Bladder cancer is the seventh most common cancer in males worldwide. Every year, about 20,000 people in Japan are diagnosed with bladder cancer, of whom around 8,000--mostly men--succumb to the disease. Bladder cancers can be grouped into two types: non-muscle-invasive cancers, which have a five-year survival rate of 90 percent, and muscle-invasive cancers, which have poor prognoses.

... Read more »

  • October 15, 2016
  • 03:26 PM
  • 245 views

Untangling a cause of memory loss in neurodegenerative diseases

by Dr. Jekyll in Lunatic Laboratories

Tauopathies are a group of neurodegenerative disorders, including Alzheimer's disease that are characterized by the deposition of aggregates of the tau protein inside brain cells. A new study reveals that the cutting of tau by an enzyme called caspase-2 may play a critical role in the disordered brain circuit function that occurs in these diseases.

... Read more »

Zhao, X., Kotilinek, L., Smith, B., Hlynialuk, C., Zahs, K., Ramsden, M., Cleary, J., & Ashe, K. (2016) Caspase-2 cleavage of tau reversibly impairs memory. Nature Medicine. DOI: 10.1038/nm.4199  

  • October 14, 2016
  • 02:21 PM
  • 223 views

Is it possible to normalize citation metrics?

by SciELO in SciELO in Perspective

Bibliometric indicators represent much more than an indication of the visibility, relevance and impact of an article. A researcher’s entire career profile can be summarized in one or more numerical productivity and impact indicators of his research. However, citation metrics vary considerably according to the area of knowledge, the publication age, the type of document and the coverage of the database where citations were accrued. Is it possible to normalize them? Here we discuss the challenge........ Read more »

  • October 12, 2016
  • 01:56 PM
  • 226 views

Vitamins A and C help erase cell memory

by Dr. Jekyll in Lunatic Laboratories

Vitamins A and C aren't just good for your health, they affect your DNA too. Researchers have discovered how vitamins A and C act to modify the epigenetic 'memory' held by cells; insight which is significant for regenerative medicine and our ability to reprogramme cells from one identity to another.

... Read more »

Hore, T., von Meyenn, F., Ravichandran, M., Bachman, M., Ficz, G., Oxley, D., Santos, F., Balasubramanian, S., Jurkowski, T., & Reik, W. (2016) Retinol and ascorbate drive erasure of epigenetic memory and enhance reprogramming to naïve pluripotency by complementary mechanisms. Proceedings of the National Academy of Sciences, 201608679. DOI: 10.1073/pnas.1608679113  

  • October 10, 2016
  • 11:31 AM
  • 169 views

Are There Too Few Jobs In Neuroscience?

by Neuroskeptic in Neuroskeptic_Discover



Is European neuroscience facing a jobs crisis? Writing in The Lancet Neurology, Mario Bonato and Esperanza Jubera-Garcia sound the alarm:


As young European neuroscientists, we want to bring attention to the dramatic absence of professional long-term opportunities that researchers are facing mostly, although not exclusively, in the south of Europe.

In the past few years, young scientists from several European countries have been forced to move to other countries, or to quit research a... Read more »

  • October 6, 2016
  • 01:48 PM
  • 278 views

Mental illness genetically linked to drug use and misuse

by Dr. Jekyll in Lunatic Laboratories

There are many reports of drug use leading to mental health problems, and we all know of someone having a few too many drinks to cope with a bad day. Many people who are diagnosed with a mental health disorder indulge in drugs, and vice versa. As severity of both increase, problems arise and they become more difficult to treat. But why substance involvement and psychiatric disorders often co-occur is not well understood.

... Read more »

Carey, C., Agrawal, A., Bucholz, K., Hartz, S., Lynskey, M., Nelson, E., Bierut, L., & Bogdan, R. (2016) Associations between Polygenic Risk for Psychiatric Disorders and Substance Involvement. Frontiers in Genetics. DOI: 10.3389/fgene.2016.00149  

  • October 4, 2016
  • 05:36 PM
  • 246 views

Revising the meaning of 'prion'

by Dr. Jekyll in Lunatic Laboratories

A team of scientists are redefining what it means to be a prion--a type of protein that can pass heritable traits from cell to cell by its structure instead of by DNA. Although prions are infamous for causing Creutzfeldt-Jakob disease, fatal familial insomnia, and bovine spongiform encephalopathy, commonly known as mad cow's disease, the present study indicates that prions identified in yeast, and possibly in plants, and other organisms may be beneficial.

... Read more »

Chakrabortee, S., Byers, J., Jones, S., Garcia, D., Bhullar, B., Chang, A., She, R., Lee, L., Fremin, B., Lindquist, S.... (2016) Intrinsically Disordered Proteins Drive Emergence and Inheritance of Biological Traits. Cell. DOI: 10.1016/j.cell.2016.09.017  

  • October 3, 2016
  • 01:54 PM
  • 261 views

For women, caffeine could be ally in warding off dementia

by Dr. Jekyll in Lunatic Laboratories

Among a group of older women, self-reported caffeine consumption of more than 261 mg per day was associated with a 36 percent reduction in the risk of incident dementia over 10 years of follow-up. This level is equivalent to two to three 8-oz cups of coffee per day, five to six 8-oz cups of black tea, or seven to eight 12-ounce cans of cola.

... Read more »

Driscoll, I., Shumaker, S., Snively, B., Margolis, K., Manson, J., Vitolins, M., Rossom, R., & Espeland, M. (2016) Relationships Between Caffeine Intake and Risk for Probable Dementia or Global Cognitive Impairment: The Women’s Health Initiative Memory Study. The Journals of Gerontology Series A: Biological Sciences and Medical Sciences. DOI: 10.1093/gerona/glw078  

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