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  • September 17, 2014
  • 02:49 PM
  • 6 views

September 17, 2014

by Erin Campbell in HighMag Blog

All good things must end—even the focal adhesions that are so key to cell migration. Today’s notable image is the first live cell visualization of ECM degradation at focal adhesions, in a recent paper that reports the link between CLASPs, exocytosis, and focal adhesion turnover. Cell migration depends on the precisely-timed formation of focal adhesions (FAs) that link the crawling cell to the extracellular matrix (ECM). FAs serve as anchor points for the crawling cell, yet must later di........ Read more »

  • September 17, 2014
  • 01:24 PM
  • 15 views

Biofilms: Using Bacteria for new Designer Nanomaterials

by Gabriel in Lunatic Laboratories

For most people biofilms conjure up images of slippery stones in a streambed and dirty drains. While there are plenty of "bad" biofilms around – they are even the same stuff that causes pesky dental plaque and a host of other more serious medical problems – a team of researchers sees biofilms as a robust new platform for designer nanomaterials that could clean up polluted rivers, manufacture pharmaceutical products, fabricate new textiles, and more.... Read more »

Peter Q. Nguyen,, Zsofia Botyanszki,, Pei Kun R. Tay,, & Neel S. Joshi. (2014) Programmable biofilm-based materials from engineered curli nanofibres. Nature Communications. info:/10.1038/ncomms5945

  • September 17, 2014
  • 12:48 PM
  • 11 views

Live Fast, Die Young: Evolutionary Outcomes of an Asteroid Impact

by Melissa Chernick in Science Storiented

A new semester has started and with it an influx of new students into the lab has begun. Busy has become my middle name. So when I was looking around for a paper to write about I wanted something different and cool. Not exactly hard to find in science. The asteroid known as 2012 DA14 will narrowly miss Earth this Friday, the closest known asteroid flyby on record. And by close we’re talking within the orbits of many communications satellites. This got me thinking about and looking for recent p........ Read more »

  • September 17, 2014
  • 09:46 AM
  • 11 views

Video Tip of the Week: GOLD, Genomes OnLine Database

by Mary in OpenHelix

Yes, I know some people suffer from YAGS-malaise (Yet Another Genome Syndrome), but I don’t. I continue to be psyched for every genome I hear about. I even liked the salmon lice one. And Yaks. The crowd-funded Puerto Rican parrot project was so very neat. These genomes may not matter much for your everyday life, […]... Read more »

Liolios Konstantinos, Lynette Hirschman, Ioanna Pagani, Bahador Nosrat, Peter Sterk, Owen White, Philippe Rocca-Serra, Susanna-Assunta Sansone, Chris Taylor, & Nikos C. Kyrpides. (2012) The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness. Standards in Genomic Sciences, 6(3), 444-453. DOI: http://dx.doi.org/10.4056/sigs.2675953  

Field Dawn, Tanya Gray, Norman Morrison, Jeremy Selengut, Peter Sterk, Tatiana Tatusova, Nicholas Thomson, Michael J Allen, Samuel V Angiuoli, & Michael Ashburner. (2008) The minimum information about a genome sequence (MIGS) specification. Nature Biotechnology, 26(5), 541-547. DOI: http://dx.doi.org/10.1038/nbt1360  

  • September 17, 2014
  • 08:28 AM
  • 12 views

Builders and Blocks – Engineering Blood Vessels with Stem Cells

by Jalees Rehman in The Next Regeneration

Back in 2001, when we first began studying how regenerative cells (stem cells or more mature progenitor cells) enhance blood vessel growth, our group as well as many of our colleagues focused on one specific type of blood vessel: arteries. Arteries are responsible for supplying oxygen to all organs and tissues of the body and arteries are more likely to develop gradual plaque build-up (atherosclerosis) than veins or networks of smaller blood vessels (capillaries). Once the amount of plaque in an........ Read more »

Paul JD, Coulombe KL, Toth PT, Zhang Y, Marsboom G, Bindokas VP, Smith DW, Murry CE, & Rehman J. (2013) SLIT3-ROBO4 activation promotes vascular network formation in human engineered tissue and angiogenesis in vivo. Journal of molecular and cellular cardiology, 124-31. PMID: 24090675  

  • September 17, 2014
  • 08:05 AM
  • 20 views

Should I Stay Or Should I Go

by Mark Lasbury in As Many Exceptions As Rules

Bacteria can swarm to conquer new territory or settle into structured biofilms, not unlike tribes that are nomadic versus those that build cities. New research indicates has shed light on the mechanics of swarming and biofilm production, including the function of extracellular DNA and secreted polysaccharides. Both biofilms and swarming depend on quorum sensing, and several new papers have identified chemicals that can interrupt quorum sensing in pathogenic bacteria and therefore prevent disease........ Read more »

Gloag ES, Turnbull L, Huang A, Vallotton P, Wang H, Nolan LM, Mililli L, Hunt C, Lu J, Osvath SR.... (2013) Self-organization of bacterial biofilms is facilitated by extracellular DNA. Proceedings of the National Academy of Sciences of the United States of America, 110(28), 11541-6. PMID: 23798445  

Alteri CJ, Himpsl SD, Pickens SR, Lindner JR, Zora JS, Miller JE, Arno PD, Straight SW, & Mobley HL. (2013) Multicellular bacteria deploy the type VI secretion system to preemptively strike neighboring cells. PLoS pathogens, 9(9). PMID: 24039579  

  • September 17, 2014
  • 06:29 AM
  • 19 views

Autoimmune disease risk and eating disorders

by Paul Whiteley in Questioning Answers

"We were set up. The cops were waiting for us.""We observed an association between eating disorders and several autoimmune diseases with different genetic backgrounds. Our findings support the link between immune-mediated mechanisms and development of eating disorders".So said the paper by Anu Raevuori and colleagues [1] (open-access) based on an analysis of over 2300 people "treated at the Eating Disorder Unit of Helsinki University Central Hospital between 1995 and 2010" compared with nea........ Read more »

Raevuori A, Haukka J, Vaarala O, Suvisaari JM, Gissler M, Grainger M, Linna MS, & Suokas JT. (2014) The increased risk for autoimmune diseases in patients with eating disorders. PloS one, 9(8). PMID: 25147950  

  • September 17, 2014
  • 06:09 AM
  • 21 views

Unwelcome colonisers: biofilm formation on voice prostheses

by socgenmicro in Microbe Post

A human being’s voice is one of their most distinguishing and individual features. Most of us have experienced the frustration of temporarily losing our voices – but for many survivors of laryngeal cancer (cancer of the voice box), this loss … Continue reading →... Read more »

Talpaert, M., Balfour, A., Stevens, S., Baker, M., Muhlschlegel, F., & Gourlay, C. (2014) Candida Biofilm Formation on Voice Prostheses. Journal of Medical Microbiology. DOI: 10.1099/jmm.0.078717-0  

  • September 16, 2014
  • 10:15 PM
  • 34 views

Colon cancer, mathematical time travel, and questioning the sequential mutation model.

by Artem Kaznatcheev in Evolutionary Games Group

On Saturday, I arrived in Columbus, Ohio for the the MBI Workshop on the Ecology and Evolution of Cancer. Today, our second day started. The meeting is an exciting combination of biology-minded mathematicians and computer scientists, and math-friendly biologist and clinicians. As is typical of workshops, the speakers of the first day had an agenda […]... Read more »

Baker AM, Cereser B, Melton S, Fletcher AG, Rodriguez-Justo M, Tadrous PJ, Humphries A, Elia G, McDonald SA, Wright NA.... (2014) Quantification of crypt and stem cell evolution in the normal and neoplastic human colon. Cell reports, 8(4), 940-7. PMID: 25127143  

  • September 16, 2014
  • 01:20 PM
  • 49 views

GM plants with modified 'eskimo1' gene have increased 'drought tolerance'

by This Science is Crazy! in This Science Is Crazy!

New study uses siRNA and 35S promoter to regulate multiple genes including ESK1 to improve drought tolerance in Arabidopsis... Read more »

  • September 16, 2014
  • 01:20 PM
  • 41 views

New Cocktail Turns Adult Cells into Stem Cells

by Gabriel in Lunatic Laboratories

For those of us who were following stem cell news, recently the field had a huge setback when a paper, that offered a cheap and novel way to create stem cells, was retracted from publication. Regenerative medicine aims to replace lost or damaged cells, tissues or organs through cellular transplantation, but the promise to a better life has been hampered. Because stem cells derived from human embryos can trigger ethical concerns, a good solution is reprogramming adult cells back to an embryo-like........ Read more »

Buganim Y, Markoulaki S, van Wietmarschen N, Hoke H, Wu T, Ganz K, Akhtar-Zaidi B, He Y, Abraham BJ, Porubsky D.... (2014) The Developmental Potential of iPSCs Is Greatly Influenced by Reprogramming Factor Selection. Cell stem cell, 15(3), 295-309. PMID: 25192464  

  • September 16, 2014
  • 02:50 AM
  • 62 views

The schizophrenias (plural)

by Paul Whiteley in Questioning Answers

A micropost if you will, to draw your attention to the paper by Javier Arnedo and colleagues [1] mentioning the concept of 'the schizophrenias' (plural). Some media coverage of this paper can be found here and here. The crux of the paper is that although currently unified by a diagnostic label, schizophrenia seems to be comprised of various conditions: "caused by a moderate number of separate genotypic networks associated with several distinct clinical syndromes"."... dogs and cats living t........ Read more »

Javier Arnedo, Dragan M. Svrakic, Coral del Val, Rocío Romero-Zaliz, Helena Hernández-Cuervo, Molecular Genetics of Schizophrenia Consortium, Ayman H. Fanous, Michele T. Pato, Carlos N. Pato, Gabriel A. de Erausquin.... (2014) Uncovering the Hidden Risk Architecture of the Schizophrenias: Confirmation in Three Independent Genome-Wide Association Studies. The American Journal of Psychiatry. info:/doi:10.1176/appi.ajp.2014.14040435

  • September 15, 2014
  • 03:45 PM
  • 53 views

SARS-CoV Nucleocapsid protein and Mitochondria: a personal story

by thelonevirologist in Virology Tidbits

The SARS-CoV N protein has been reported to induce Mitochondria dependent apoptosis is some cell lines. Here results are reported from a study from 2004 which was never published, suggesting that SARS-CoV might induce mitochondrial fusion rather than fission. ... Read more »

Moshynskyy I, Viswanathan S, Vasilenko N, Lobanov V, Petric M, Babiuk LA, & Zakhartchouk AN. (2007) Intracellular localization of the SARS coronavirus protein 9b: evidence of active export from the nucleus. Virus research, 127(1), 116-21. PMID: 17448558  

Zhang L, Wei L, Jiang D, Wang J, Cong X, & Fei R. (2007) SARS-CoV nucleocapsid protein induced apoptosis of COS-1 mediated by the mitochondrial pathway. Artificial cells, blood substitutes, and immobilization biotechnology, 35(2), 237-53. PMID: 17453707  

Wlodkowic D, Skommer J, & Darzynkiewicz Z. (2012) Cytometry of apoptosis. Historical perspective and new advances. Experimental oncology, 34(3), 255-62. PMID: 23070010  

  • September 15, 2014
  • 12:58 PM
  • 69 views

The Genetic Roots of Schizophrenia

by Gabriel in Lunatic Laboratories

I have a friend who lost an eye — not in a war zone like you might suspect given my background — but to his brother. Yes, you read that correctly, his brother tried to kill him and in the process he lost his eye. I’ve told this story before, but whenever new schizophrenia research comes out I feel the need to tell it again. While he has forgiven his brother (partly because not long after, he was diagnosed as schizophrenic), he will not be able to see him again until he is released from pri........ Read more »

avier Arnedo, M.S.; Dragan M. Svrakic, M.D., Ph.D.; Coral del Val, Ph.D.; Rocío Romero-Zaliz, Ph.D.; Helena Hernández-Cuervo, M.D.; Molecular Genetics of Schizophrenia Consortium; Ayman H. Fanous, M.D.; Michele T. Pato, M.D.; Carlos N. Pato, M.D., Ph.D. (2014) Uncovering the Hidden Risk Architecture of the Schizophrenias: Confirmation in Three Independent Genome-Wide Association Studies. The American Journal of Psychiatry. info:/10.1176/appi.ajp.2014.14040435

  • September 15, 2014
  • 12:06 PM
  • 40 views

Poop Transplants Let Pack Rats Eat Poison

by Elizabeth Preston in Inkfish

Can’t eat poison without dying? Maybe your gut microbes are to blame. Rodents in the Mojave Desert have evolved to eat toxic creosote bushes with the help of specialized gut bacteria. Although scientists had long suspected that bacteria might be key to the rats’ power, they proved it by feeding the rodents antibiotics and ground-up […]The post Poop Transplants Let Pack Rats Eat Poison appeared first on Inkfish.... Read more »

Kohl KD, Weiss RB, Cox J, Dale C, & Denise Dearing M. (2014) Gut microbes of mammalian herbivores facilitate intake of plant toxins. Ecology letters, 17(10), 1238-46. PMID: 25040855  

  • September 15, 2014
  • 08:00 AM
  • 54 views

Sweating Is The Pits

by Mark E. Lasbury in The 'Scope

New research is delving into the possible negative aspects of antiperspirants and deodorants. A 2014 study indicates that bacterial fauna is altered by the use of antiperspirants and can lead to overgrowth of bacteria that actually produce more foul smelling chemicals. On a more important note, research is showing that aluminum from antiperspirants may contribute to breast cancer growth, including promotion of estrogen hormone production, altered iron metabolism, and increased oxygen radical for........ Read more »

Callewaert C, Hutapea P, Van de Wiele T, & Boon N. (2014) Deodorants and antiperspirants affect the axillary bacterial community. Archives of dermatological research. PMID: 25077920  

  • September 15, 2014
  • 05:57 AM
  • 37 views

Turritopsis Dohrnii - Is It Really Immortal?

by beredim in Strange Animals

The "Immortal" JellyfishCredit: Peter Schuchert/The Hydrozoa DirectoryKingdom: AnimaliaPhylum: CnidariaClass: HydrozoaOrder: AnthoathecataFamily: OceaniidaeGenus: TurritopsisSpecies: Turritopsis dohrnii (formerly classified as T. nutricula.)Common Name: The immortal jellyfishMost of the animals featured on the site are chosen based on their unusual looks. However, this not the case with Turritopsis dohrnii, which seemingly has no notable morphological characteristics. On the outside, i........ Read more »

  • September 15, 2014
  • 04:47 AM
  • 48 views

Zinc and copper and autism

by Paul Whiteley in Questioning Answers

The paper by Li and colleagues [1] looking at serum copper (Cu) and zinc (Zn) levels in a group of participants diagnosed with an autism spectrum disorder (ASD) is the source material for today's post. Highlighting how "mean serum Zn levels and Zn/Cu ratio were significantly lower in children with ASD compared with normal cases... whereas serum Cu levels were significantly higher" the continued focus on the metallome in autism carries on at a pace. I should at this point out that I'm not in........ Read more »

  • September 14, 2014
  • 02:24 PM
  • 55 views

Biospleen Helps Clean Blood to Prevent Sepsis

by Gabriel in Lunatic Laboratories

When a patient has sepsis Things can go downhill fast. A life-threatening condition in which bacteria or fungi multiply in a patient's blood -- sepsis is often too fast for antibiotics to help. But that's all about to change with the introduction of a new device -- inspired by the human spleen -- that may radically transform the way doctors treat sepsis.... Read more »

Kang JH, Super M, Yung CW, Cooper RM, Domansky K, Graveline AR, Mammoto T, Berthet JB, Tobin H, Cartwright MJ.... (2014) An extracorporeal blood-cleansing device for sepsis therapy. Nature medicine. PMID: 25216635  

  • September 14, 2014
  • 01:00 AM
  • 40 views

Telepathy is Almost Here

by Viputheshwar Sitaraman in Draw Science

Telepathy is under works; it's just super clunky right now. Non-invasive technology enables brain-to-brain communication by converting words into binary and from binary into pulses of light and back.... Read more »

Grau C, Ginhoux R, Riera A, Nguyen TL, Chauvat H, Berg M, Amengual JL, Pascual-Leone A, & Ruffini G. (2014) Conscious Brain-to-Brain Communication in Humans Using Non-Invasive Technologies. PloS one, 9(8). PMID: 25137064  

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