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by Aurametrix team in Irritable Bowel Blog
And the answer is ... either or all of the above. And this is not a complete list of all that can happen. In some rare conditions, for example, tryptophan could also make your pee purple.Tryptophan supplements were used as a popular sleeping aid until negative press in 1989. The FDA banned dietary tryptophan supplements from the market, just days before the arrival of Prozac rising as the new promise for chemical happiness. Further investigation showed that ill effects of tryptophan were actually due to a contaminant in the supplement not the amino acid itself. Today you can find tryptophan at many supplement retailers. You can also get it from food - from chocolate or red meat, for example. What does it really do in our bodies?Tryptophan is a complex aromatic amino acid - one of eight "essential" amino acids that have to be taken with food as they cannot be created by the human body. Tryptophan metabolism is complex - KEGG pathway shows the multitude of reactions it participates in. One of tryptophan metabolites - Kynurenic acid - is involved in the regulatory function of the gastrointestinal system and the modulation of the inflammatory response. Another metabolite is neurotransmitter Serotonin which has a calming and sleeping-inducing effect on the brain. Tryptophan can be used by the body to create 5-hydroxytryptophan (also known as 5-HTP and oxitriptan). 5-HTP is sold as a dietary supplement as an antidepressant and sleep aid. It is marketed under many different trade names such as Cincofarm, Levothym, Oxyfan and Triptum. Studies showed that 5-HTP provides benefits with regard to depression, blood pressure and regular sleep patterns. So even though that fact that the Thanksgiving turkey is responsible for sleepiness is an urban legend, tryptophan could definitely contribute to calmness and happiness. Yet, according to a study by British researchers, irritable bowel syndrome sufferers have an increase in gastrointestinal symptoms after ingestion of a large dose of tryptophan, in addition to having fewer symptoms of anxiety and depression. One of the reasons: tryptophan metabolism along the kynurenine pathway is inhibited. According to earlier studies (like the referenced 1998 articles by Austrian scientists), people with fructose malabsorption have abnormal tryptophan metabolism too, leaving them with less available tryptophan, and it seems to be responsible for mental depression (Ledochowski et al., 1998). What happens to tryptophan abnormally accumulated in intestines? Here are the bad news - it is utilized by intestinal bacteria (e.g. Lactobacillus) and converted into indole and skatole - metabolites responsible for strong fecal smell. The rate of production of these smelly compounds depends on the acidity - it is greatest at pH 6.5 and less at pH 5.0 and 8.0. Food-food interaction could lessen or enhance the "smelly"effects. The suppression of tryptophan degradation by propolis, for example, could contribute to beneficial health properties. Preliminary results were also reported for cocoa extracts, Fructooligosacharides (FOS) and resistant starch, but more studies are needed.So, how much tryptophan do you really need? Half a gram, 2 grams, even more? It depends on your metabolism, your life style and your diet. It may be a good idea to watch your wellbeing along with tryptophan intake, to find your own optimal daily value.REFERENCESCapuron L, Schroecksnadel S, Féart C, Aubert A, Higueret D, Barberger-Gateau P, Layé S, & Fuchs D (2011). Chronic Low-Grade Inflammation in Elderly Persons Is Associated with Altered Tryptophan and Tyrosine Metabolism: Role in Neuropsychiatric Symptoms. Biological psychiatry PMID: 21277567Christmas DM; Badawy AAB; Hince D; Davies SJC; Probert C; Creed T; Smithson J; Afzal M; et al. (Oct 2010). Increased serum free tryptophan in patients with diarrhea-predominant irritable bowel syndrome. NUTR RES. 30:678-688. DOI.Hood SD; Hince DA; Davies SJC; Argyropoulos S; Robinson H; Potokar J; Nutt DJ. (Feb 2010). Effects of acute tryptophan depletion in serotonin reuptake inhibitor-remitted patients with generalized anxiety disorder. PSYCHOPHARMACOLOGY. 208:223-232. DOI.Shufflebotham J; Hood S; Hendry J; Hince DA; Morris K; Nutt D; Probert C; Potokar J. (Nov 2006). Acute tryptophan depletion alters gastrointestinal and anxiety symptoms in irritable bowel syndrome. Am J Gastroenterol. 101:2582-2587. DOI.Ledochowski M, Widner B, Murr C, Sperner-Unterweger B, Fuchs D. Fructose malabsorption is associated with decreased plasma tryptophan. Scand J Gastroenterol. 2001 Apr;36(4):367-71.Ledochowski M, Sperner-Unterweger B, Widner B, Fuchs D. Fructose malabsorption is associated with early signs of mental depression. Eur J Med Res. 1998 Jun 17;3(6):295-8. Xu ZR, Hu CH, Wang MQ. Effects of fructooligosaccharide on conversion of L-tryptophan to skatole and indole by mixed populations of pig fecal bacteria. J Gen Appl Microbiol. 2002 Apr;48(2):83-90.Jones HE, Johnson RE, Bigelow GE, Silverman K, Mudric T, Strain EC. Safety and efficacy of L-tryptophan and behavioral incentives for treatment of cocaine dependence: a... Read more »
Capuron L, Schroecksnadel S, Féart C, Aubert A, Higueret D, Barberger-Gateau P, Layé S, & Fuchs D. (2011) Chronic Low-Grade Inflammation in Elderly Persons Is Associated with Altered Tryptophan and Tyrosine Metabolism: Role in Neuropsychiatric Symptoms. Biological psychiatry. PMID: 21277567
by Aurametrix team in Irritable Bowel Blog
Irritable Bowel Syndrome is nothing to sneeze at. Especially during the sneezing season. As a matter of fact, you are more prone to have irritable bowel if you have a seasonal allergy. The likelihood of IBS is 3 times higher in patients reporting atopic symptoms (2.67 times higher in patients with seasonal allergic rhinitis and 3. 85 times higher in patients with allergic eczema, according to Tobin and his colleagues who administered questionnaires to 125 patients). So some of that abdominal pain may be part of allergic disease. Almost any other symptom of IBS may owe to it, too. See for example this case involving leaky gut and diarrhea or this case of bloating and constipation.It is May and grass pollen is adding to flowering trees in most of the US. Europe is experiencing high birch pollen counts with grasses ready to pop up. The Mediterranean region is dominated by the pollination of grasses and olive trees. Allergy season is over in Japan, Australia and South Africa but new pollen sources will be soon waking up. Seasonal allergies are common. It is estimated that 15-20% of Americans suffer from seasonal and perennial allergies. Numbers of sufferers have been increasing over the years. The best way to control allergies is to avoid the triggers - stay indoors, wash hands and take showers after coming in from outdoors. Of course, there are also drugs. But relief from allergies could come in more natural ways. For example, from probiotics. A recent study showed that Lactobacillus paracasei, commonly found in our orifices (oral and rectal mucosa to be more precise) could help with grass allergies. This is not news - earlier research showed it was effective against diarrhea in infants and helped some patients with chronic fatigue syndrome and seasonal allergies. The research was sponsored by Nestle, one of several manufacturers already adding L. paracasei to their products. Their results, based on a randomized, double-blind, placebo-controlled study, show that the ability of the nose to combat allergies significantly improves (NCT01150253). Where are these probiotics found? Lactobacillus bacteria are involved in dairy fermentation and are present in fermented milk products and cheeses. Irish Cheddar, hand-made Spanish cheeses, Ricotta, Italian hard cheeses and Mozzarella harbor many different strains of lactobacilli. Many of these products, however, are not tolerated well by the IBS population about half of which is lactose intolerant. The good news is that probiotics are not only in dairy products. Lactobacillus paracasei LMGP22043 found in artichokes was recently shown to be carried into the human gut and challenge the bad guys there (E.coli and Clostridium). And even though European food safety authority believes that LMGP22043 does not relieve gastrointestinal discomfort, there were studies showing that artichokes do help those with alternating IBS. So enjoy your vegetables and lets do more research! ... Read more »
Wassenberg J, Nutten S, Audran R, Barbier N, Aubert V, Moulin J, Mercenier A, & Spertini F. (2011) Effect of Lactobacillus paracasei ST11 on a nasal provocation test with grass pollen in allergic rhinitis. Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology, 41(4), 565-73. PMID: 21395878
Valerio F, de Candia S, Lonigro SL, Russo F, Riezzo G, Orlando A, De Bellis P, Sisto A, & Lavermicocca P. (2011) Role of the probiotic strain Lactobacillus paracasei LMGP22043 carried by artichokes in influencing faecal bacteria and biochemical parameters in human subjects. Journal of applied microbiology. PMID: 21447019
by Aurametrix team in Olfactics and Diagnostics
Body odors are important cues used for social and sexual discrimination. As was shown many times, animals can easily smell age-, health- and genetics-related differences. Recent study of our large-eyed relatives, ring-tailed lemurs, demonstrate that drugs can alter body scents and change behavior. Researchers examined changes in endocrine and semiochemical profiles of sexually mature female lemurs treated with hormonal contraceptives during their breeding season. Genetic diversity and kinship were estimated using 11–14 microsatellite loci and pairwise genetic distances. Gas chromatography-mass spectrometry (GCMS) was used to detect the volatile compounds in odor. A rater blind to the treatments scored lemur male behavior in regards to female odors. The conclusion? Contraceptives change chemical ‘signature’, minimizing distinctiveness and genetic fitness cues. No more can the males determine which females are genetically and physically beautiful. All contracepted females lost their individuality and started to smell funny. What about hormones and chemicals in our food? Maybe one day humans will wake up and realize that something is lost? May it will happen sooner rather than later...For those interested in helping with our research of human environmental malodor - check our studies or this call for collaboration. Jeremy Chase Crawford,Marylène Boulet and Christine M. Drea1 (2010). Smelling wrong: hormonal contraception in lemurs alters critical female odour cues Proceedings B ... Read more »
Jeremy Chase Crawford,Marylène Boulet and Christine M. Drea1. (2010) Smelling wrong: hormonal contraception in lemurs alters critical female odour cues. Proceedings B . info:/
by Aurametrix team in Olfactics and Diagnostics
Researchers have known for years that smell of cancer patients is chemically different from healthy individuals. One more study featured in British Journal of Cancer brings us a bit closer to an inexpensive, easy-to-use, portable device for home diagnostics. Exhaled breath collected from 177 volunteers (patients with lung, colon, breast, and prostate cancers and healthy controls) was examined by gold nanoparticle nanosensor arrays (GNPs) and gas chromatography linked to the mass spectrometry technique (GC-MS). GNP sensor resistance responses showed remarkable separation between cancer and healthy controls (Principal Component Analysis results are shown in the Figure: LC, lung cancer; CC, colon cancer; BC, breast cancer; PC, prostate cancer).Most of the VOCs reported in this study appear for the first time in the literature, adding to the wide spectrum of chemicals previously proposed as cancer biomarkers. Some of the chemicals - mostly those predictive of lung and prostate cancers - are frequently released to the environment through petroleum spills. 1-methyl-4-(1-methylethyl)-benzene - known as p-cymene or p-isopropyltoluene - is utilized by various species for chemical communication. It can be derived from the essential oils of herbs and spices and has biocidal properties against foodborne pathogens such as spoilage yeasts and E. coli O157:H7. p-cymene is the biological precursor of carvacrol that is also an antimicrobial agent (Kiskó and Roller, 2005). It's decreased with cancer, and is present at higher concentrations in healthy individuals.Toluene, dodecane and other aromatic components of petroleum are among chemicals found in human breath. Typical "octane booster" toluene - present at higher concentrations in lung and prostate cancers - is toxic to living organisms although some bacteria (like P. putida that has toluene operon) are able to grow in its presence (Eaton 1997). Dodecane, a biogasoline component, is higher in the breath of healthy individuals. It is decreased in lung cancer. One of its derivatives - 2,6,11-trimethyl-dodecane was found in 80% of the males, but in none of the females participating in the study. Another aromatic compound, 2-amino-5-isopropyl-8-methyl-1-azulenecarbonitrile, similar to carbonitriles used in manufacturing of fragrance agents, is present at higher concentrations in breast, colon and prostate cancers when compared to healthy controls. An alcane 3,7-dimethyl-undecane was found to be indicative of allergies. It was previously found to be eliminated from mice odors when it enters reproductive cycle (Achiraman & Archunan, 2006) and proposed to be used in diagnostics of asthma (Dragonieri et al., 2007).Chemicals in breath can tell not only about cancers, but also relate to other diseases, environmental exposures and dietary behavior. This might decrease discriminative power of expensive metabolomics technologies and bioinformatics approaches not based on additional knowledge, yet custom-made sensor arrays show great promise. ReferencesPeng G, Hakim M, Broza YY, Billan S, Abdah-Bortnyak R, Kuten A, Tisch U, & Haick H (2010). Detection of lung, breast, colorectal, and prostate cancers from exhaled breath using a single array of nanosensors. British journal of cancer, 103 (4), 542-51 PMID: 20648015Gabriella Kiskó, Sibel Roller. (2005) Carvacrol and p-cymene inactivate Escherichia coli O157:H7 in apple juice. BMC Microbiol. 2005; 5: 36 Eaton RW. (1997) p-Cymene catabolic pathway in Pseudomonas putida F1: cloning and characterization of DNA encoding conversion of p-cymene to p-cumate. J Bacteriol. 1997 May;179(10):3171-80.Shanmugam Achiraman, Govindaraju Archunan (2006) 1-Iodo-2methylundecane, a putative estrus-specific urinary chemo-signal of female mouse (Mus musculus) Theriogenology 66, 1913–1920 Dragonieri S, Schot R, Mertens BJ, Le Cessie S, Gauw SA, Spanevello A, Resta O, Willard NP, Vink TJ, Rabe KF, Bel EH, Sterk PJ. (2007) An electronic nose in the discrimination of patients with asthma and controls. J Allergy Clin Immunol. 120(4):856-62. ... Read more »
Peng G, Hakim M, Broza YY, Billan S, Abdah-Bortnyak R, Kuten A, Tisch U, & Haick H. (2010) Detection of lung, breast, colorectal, and prostate cancers from exhaled breath using a single array of nanosensors. British journal of cancer, 103(4), 542-51. PMID: 20648015
by Aurametrix team in Olfactics and Diagnostics
Physicians always knew that breath contains clues to diseases. Chemicals in breath often correlate with chemicals in saliva and blood - be it alcohol, anaesthetics or other metabolites (see, for example, this study by Dr Andreas Hengstenberg).As one of my interests is breath-based detection of ovarian cancer, I took note of the recent paper claiming 99% to 100% accuracy of detecting ovarian cancer by metabolites in blood. The authors used customized functional support vector machine-based machine-learning algorithms to classify thousands of metabolites measured by mass spectrometry (JEOL AccuTOF™ DART® that allowed to forego conventional liquid chromatography as sufficient resolution was achieved without separation) in peripheral blood. 100% sensitivity and 100% specificity was achieved with 64-30 split validation technique, while 100% sensitivity and 98% specificity was the accuracy of leave-one-out-cross-validation. Very large number of metabolites, from 2,000 to 3,000 features, contributed to such discriminatory power (see the list of 14,000+ in supplemental material) Set of 25 canonical metabolic pathways relevant to the uploaded elementalformulae ranked according to their p-values (hypergeometric distribution).Histamine, amino acid, fructose and glucose metabolism were among the most prominent processes discriminating cancer and healthy blood. It's that simple: sugar feeds cancer. Scientists have long found that cancer cells slurp fructose, and that fructose intake can be linked to some cancers. Histamine/polyamine interplay in cancers is also known. Histamine may be involved in inhibition of the local immune response against cancer. Is amino acid metabolism also linked to cancer? Well, what is not. Metabolomic biomarkers were always known to have diagnostic potential - cholesterol and glucose are among the oldest and most widely performed diagnostic tests. Yet, most bleeding edge cancer detection platforms are genomic or proteomic in nature. Of the thousands of known biomarkers, only a handful have made it into the clinic. Existing ovarian cancer tests mostly rely on detecting a protein - carbohydrate antigen 125. Vermillion's OVA1 and HealthLinx OvPlex tests use five proteins. This may be extended to 7.Metabolites represent the end products of the genome and proteome, thus metabolomics-based diagnostics holds the promise of providing powerful diagnostics, allowing for differentiation of increased and decreased levels of chemicals with low process coefficient of variation. Metabolomic tests were used for medical diagnostics starting with Hippocrates and Lavoisier. They continue to be explored by modern scientists. Dr Michael Phillips, for example, developed HeartsBreath Test, approved by the US Food and Drug Agency for early diagnosis of heart transplant rejection. Research proved the potential of inexpensive breath tests in discriminating lung, breast, colon and prostate cancers. Let's hope the new article - along with others - will lead to novel consumer products, not only more academic research and peer-reviewed publications.Zhou M, Guan W, Walker LD, Mezencev R, Benigno BB, Gray A, Fernández FM, & McDonald JF (2010). Rapid Mass Spectrometric Metabolic Profiling of Blood Sera Detects Ovarian Cancer with High Accuracy. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology PMID: 20699376... Read more »
Zhou M, Guan W, Walker LD, Mezencev R, Benigno BB, Gray A, Fernández FM, & McDonald JF. (2010) Rapid Mass Spectrometric Metabolic Profiling of Blood Sera Detects Ovarian Cancer with High Accuracy. Cancer epidemiology, biomarkers . PMID: 20699376
by Aurametrix team in Olfactics and Diagnostics
Odor is like fingerprints or facial features - it's unique. Yet no single measurement could be easily applied to recognize an individual. GC/MS measurements can be used to analyze mixtures of acids, alcohols, aldehydes, hydrocarbons, esters, ketones, and nitrogenous molecules in human odor. Complex algorithms mining patterns help to pinpoint the signatures. But could these signatures be easily derived from genetic makeups?Recent article published in the Journal of Chemical Ecology looked at the usual suspects - major histocompatibility locus (MHC) and found that these genes do not determine major patterns. Volatile carboxylic acids are the most diverse class of known axillary odorants, and the pattern of these acids is genetically determined. These acids - like vast majority of human odorous compounds - are produced by human microbiome, in this case by skin bacteria. Odors of 12 families, comprising 3 to 6 siblings,were analyzed with comprehensive two-dimensional gas chromatography (GC x GC) and time-of-flight mass spectrometry (ToF MS). the analysis onfirmed the presence of individual signatures. but failed to find odors specific to HLA genes. Even though paternally inherited HLA-associated odors were proposed to influence women odor preferences, genetic basis of odors may be more complicated than previously thought. ReferencesNatsch A, Kuhn F, & Tiercy JM (2010). Lack of Evidence for HLA-Linked Patterns of Odorous Carboxylic Acids Released from Glutamine Conjugates Secreted in the Human Axilla. Journal of chemical ecology PMID: 20623248Thompson EE, Haller G, Pinto JM, Sun Y, Zelano B, Jacob S, McClintock MK, Nicolae DL, Ober C. (2010) Sequence variations at the human leukocyte antigen-linked olfactory receptor cluster do not influence female preferences for male odors. Hum Immunol. 2010 Jan;71(1):100-3. PMID: 19833159 Jacob S, McClintock MK, Zelano B, Ober C (2002) Paternally inherited HLA alleles are associated with women's choice of male odor. Nature Genet 30: 175-179 PMID: 11799397 PDF ... Read more »
Natsch A, Kuhn F, & Tiercy JM. (2010) Lack of Evidence for HLA-Linked Patterns of Odorous Carboxylic Acids Released from Glutamine Conjugates Secreted in the Human Axilla. Journal of chemical ecology. PMID: 20623248
by Aurametrix team in Health Technologies
Information technology is letting people around the world come together in unprecedented ways. Wikis, blogs and microblogs like twitter, crowdsourcing and crowd-task-solving sites continue to flatten the planet. Scientific innovation used to be a private endeavor, with very narrowly specialized scientists. The Internet changed some of this but there is plenty of room for improvement.... Read more »
Johnston SC, & Hauser SL. (2009) Crowdsourcing scientific innovation. Annals of neurology, 65(6). PMID: 19562693
Wright MT, Roche B, von Unger H, Block M, & Gardner B. (2010) A call for an international collaboration on participatory research for health. Health promotion international, 25(1), 115-22. PMID: 19854843
Marsh A, Carroll D, & Foggie R. (2010) Using collective intelligence to fine-tune public health policy. Studies in health technology and informatics, 13-8. PMID: 20543334
Huss JW 3rd, Lindenbaum P, Martone M, Roberts D, Pizarro A, Valafar F, Hogenesch JB, & Su AI. (2010) The Gene Wiki: community intelligence applied to human gene annotation. Nucleic acids research, 38(Database issue). PMID: 19755503
Butler, D. (2010) Open-source science takes on neglected disease. Nature. DOI: 10.1038/news.2010.50
by Aurametrix team in Irritable Bowel Blog
Starch is that stuff that stiffens your shirts. It's also what most people eat for fuel. Wheat, rice, corn, oats, potatoes are all very starchy foods. Many popular diet plans call starch a second-rate food that should be avoided at all costs. No-starch and low starch diets are favored by irritable bowel communities, while former Weight Watchers, Jenny Craig and Atkins enthusiasts love the new Carb Lovers Diet praising starch. Yet, there may be something good about starch even for those with sensitive stomachs. Starch is a mixture of long and intermingled molecules digested with different rates and outcomes. Our bodies' response to eating starch depends on its amount and types along with our nature [1] and nurture, including intestinal microbes eating the leftovers [2].Resistant Starch (RS), also called Functional Fiber, is a type of starch that may have beneficial physiological effects. It is further classified into four or five classes, like RS2 in potatoes or RS3 (maltodextrin on food labels) formed when starchy foods are cooked and cooled. Resistant starch is not digested in the small intestine of healthy individuals. It is an effective prebiotic as it feeds and stimulates specific bacteria in the gut [3]. Bacteria consuming resistant starch raise levels of short-chain fatty acids (SCFA) and derivatives that can act as a source of energy [2,4] and provide other benefits like protection from inflammatory conditions of the bowel. Over 200 nutritional studies showed that resistant starch increases satiety, reduces food consumption and can prevent weight regain, acting almost like exercise. It also lowered insulin levels and reduced the deposition of fat.How much resistant starch do we need to eat? Adults in most developed countries consume between 3-7 grams of resistant starch per day. The Carb lovers diet recommends 10-15 grams. According to an earlier Australian study [5], 20 grams per day may be even more beneficial. However, optimal levels of resistant starch in diet are very individual, depending on body weight, metabolism, microbial makeup and dietary preferences. Flatulence and belching are among potential side effects. Resistant starch is like other types of fiber and prebiotics – everybody has their own individual threshold and every extra gram leads to production of excessive gas [6]. Fructooligosaccharides (FOS) and inulin, prebiotics selectively stimulating bacteria in the colon, usually lead to mild flatulence starting from about 10 grams per day. Isolated individuals experience discomfort even at 5 grams. 14-15 grams per day usually mark the threshold for significant increase in flatulence, stomach growling and cramping. Resistant starch may have slightly higher sensitivity thresholds [6].
... Read more »
Bird AR, Conlon MA, Christophersen CT, & Topping DL. (2010) Resistant starch, large bowel fermentation and a broader perspective of prebiotics and probiotics. Beneficial microbes, 1(4), 423-31. PMID: 21831780
by Aurametrix team in Olfactics and Diagnostics
New research from Japan brings good news: dogs can be almost as accurate as a colonoscopy exam.In patients with colorectal cancer (CRC) and controls, the sensitivity of canine scent detection of breath samples compared with conventional diagnosis by colonoscopy was 0.91 and the specificity was 0.99. The sensitivity of canine scent detection of watery stool samples was 0.97 and the specificity was 0.99. The accuracy of canine scent detection was high even for early cancer. Canine scent detection was not confounded by current smoking, benign colorectal disease or inflammatory disease. As simple as that: exhaling 100-200 ml into a breath sampling bag and storing it in a Ziploc bag at 4°C until a trained dog has a change to sniff it can be enough for diagnostics. Just one breath sample! And it was almost as good as a watery stool sample obtained during colonoscopy or this joyous examination itself.There have been many research studies that dogs, rats and even moth can detect scents pertaining to human disease. Ordinary household dogs can be trained to distinguish breath odors (McCulloch et al 2006). For some cancers, sensitivity can be as high as 100% (Horvath et al 2008). Unfortunately, sophisticated mass-spectrometry, gas chromatography and software tools interpreting the signals are still not as good as our four-legged friends that are never getting lost in the noise of disease-unrelated flavors.But we are getting better in identifying specific chemicals responsible for various conditions - from alkanes - such as pentane in breath of IBD patients and polystyrene foam or aromatic components of petroleum in cancer breath to blends of fatty acids like oleic and linoleic acids forming the smell of death. Perhaps pet rats will find their use as pocket doctors before men-made sensors are developed to cope with infections, medical conditions, even fear and anxiety that also have a distinctive odor signature. In any case, Dr. Sonoda and his colleagues bring us a reassuring word that not every frequent visitor to the GI doctor's office will have to experience the joys of a colonoscopy. Sonoda H, Kohnoe S, Yamazato T, Satoh Y, Morizono G, Shikata K, Morita M, Watanabe A, Morita M, Kakeji Y, Inoue F, & Maehara Y (2011). Colorectal cancer screening with odour material by canine scent detection. Gut PMID: 21282130Other published literature on olfactory signatures in gastrointestinal disease:Cheu HW, Brown DR, Rowe MI (1989) Breath hydrogen excretion as a screening test for the early diagnosis of necrotizing enterocolitis. Am J Dis Child 1989;143:156–9.Pelli MA, Trovarelli G,, Capodicasa E, Breath alkanes determination in ulcerative colitis and Crohn's disease. Dis Colon Rectum 1999;42:71–6.Pelton NS, Tivey DR, Howarth GS, A novel breath test for the non-invasive assessment of small intestinal mucosal injury following methotrexate administration in the rat. Scand J Gastroenterol 2004;9:1015–16. Tibble JA, Sigthorsson G, Foster R, Use of surrogate markers of inflammation and Rome criteria to distinguish organic from nonorganic intestinal disease. Gastroenterology 2002;123:450–60.... Read more »
Sonoda H, Kohnoe S, Yamazato T, Satoh Y, Morizono G, Shikata K, Morita M, Watanabe A, Morita M, Kakeji Y.... (2011) Colorectal cancer screening with odour material by canine scent detection. Gut. PMID: 21282130
by Aurametrix team in Health Technologies
"I've just picked up a fault in the AE35 unit. It's going to go 100% failure in 72 hours". These were famous words of the almighty computer HAL in "2001: A Space Odyssey". Few of us believe too much in software forecasts - be it weather, earthquakes or computer hard disk failures. Yet, we all know that sometimes it works. And such systems are very valuable, assuming they continuously improve. ... Read more »
Hsia, J., Larson, J., Ockene, J., Sarto, G., Allison, M., Hendrix, S., Robinson, J., LaCroix, A., Manson, J., & , . (2009) Resting heart rate as a low tech predictor of coronary events in women: prospective cohort study. BMJ, 338(feb03 2). DOI: 10.1136/bmj.b219
Mayo Clinic. (2009) High resting heart rate could predict heart attack in women. Mayo Clinic women's healthsource, 13(7), 3. PMID: 19498326
Froelicher VF, Duarte GM, Oakes DF, Klein J, Dubach PA, & Janosi A. (1988) The prognostic value of the exercise test. Disease-a-month : DM, 34(11), 677-735. PMID: 3056676
Sheward WJ, Naylor E, Knowles-Barley S, Armstrong JD, Brooker GA, Seckl JR, Turek FW, Holmes MC, Zee PC, & Harmar AJ. (2010) Circadian control of mouse heart rate and blood pressure by the suprachiasmatic nuclei: behavioral effects are more significant than direct outputs. PloS one, 5(3). PMID: 20339544
by Aurametrix team in Health Technologies
Injuries are most likely to be perceived as “acts of fate”, but they depend on the same determinants as other health factors: individual behavior, social and physical environment. The likelihood of injuries - unintentional ones and those caused by acts of violence - can be computed from physical location, gene-environment interactions, prior medical history, and physical traits. There are many ways to prevent injuries - just say "no" to risky behaviors, wear preventative gear while playing sports or fall-optimized shoes for elderly, watch out for others engaged in similar activities... Yet, sometimes we forget to watch, don't have access to histories of others or get diverted. Would a body sensor or a gadget with smart software be able to warn us about potential accidents ahead to help prevent accidents? What would it need to measure? Software and devices automatically detecting and reporting accidents already exist: Halo Monitoring's fall detection system, for example, consists of a chest strap and belt clip with motion sensors, heart rate and skin temperature monitors. Although the system detects falls only after they happen, a study showed that just the fact of wearing it increases alertness of seniors and reduces the number of falls. Although fall detection systems are not as advanced as telematics for cars - like OnStar or mbrace that "intelligently integrate the driver, the vehicle and the environment" - capabilities such as this will be provided in the area of next-generation health management systems like Aurametrix.Unprecedented accumulation of data - such as snapshots of driving behavior or 1.2 million person-years of hip fracture observations (Kanis JA) allows development of smarter software able to predict injuries. Logistic regression models (Kononen et al., 2011) predict seriousness of auto accidents, first-principles mathematical models (such as AHAAH for the ear) connect forces with injuries, neural net and other data mining approaches foretell which juvenile offenders are likely to return to crime (source of "intentional injuries"), or allow to calculate risk of fractures based on milk intake, personal history of accidents and body mass index. Self-quantifiers such as René Ghosh are able to figure out how to use their own data to predict future injuries. Using simple math (Riegel equation bringing all running logs on to a comparable level) and trend analysis, he tied his accidents to wanes following waxes in running performance. Researchers keep refining the variables predicting injuries. Swanenburg et al., for example, predicted multiple falls for those with a history of multiple falls (odds ratio, 5.6) and use of multiple medications (odds ratio, 2.3). And there is another simple measurement of standing position helpful in prediction. Frequent fallers, indeed, have a narrower stance width than non-fallers.In the always-connected smart-sensor-equipped future, things such as Intel's magic carpet - picking up the weight, angle and pressure of steps - will be a commodity. Gene tests predicting injuries will be integrated with data coming from our carpets, clothing, footwear and location information. And this may be sooner than you think. References 1. Centers for Disease Control and Prevention (CDC), National Center for Injury Prevention and Control. Web-based Injury Statistics Query and Reporting System (WISQARS); 2010 Mar 4 Available from: http://www.cdc.gov/injury/wisqars/index.html 2. Husted JA, Ahmed R, Chow EW, Brzustowicz LM, Bassett AS. Childhood trauma and genetic factors in familial schizophrenia associated with the NOS1AP gene. Schizophr Res. 2010 Aug;121(1-3):187-92. PMID: 205413713. Swanenburg J, de Bruin ED, Uebelhart D, & Mulder T (2010). Falls prediction in elderly people: a 1-year prospective study. Gait & posture, 31 (3), 317-21 PMID: 200478334. Kononen DW, Flannagan CA, Wang SC. Identification and validation of a logistic regression model for predicting serious injuries associated with motor vehicle crashes. Accid Anal Prev. 2011 Jan;43(1):112-22. PMID: 21094305. Price GR. Predicting mechanical damage to the organ of Corti. Hear Res. 2007 Apr;226(1-2):5-13. Epub 2006 Sep 15.PMID: 16978813 ... Read more »
Swanenburg J, de Bruin ED, Uebelhart D, & Mulder T. (2010) Falls prediction in elderly people: a 1-year prospective study. Gait , 31(3), 317-21. PMID: 20047833
by Aurametrix team in Health Technologies
Host genomics is not the main decision-making factor for bacteria immigrating into human body, but it is an important factor. Two papers recently published in the Proceedings of the National Academy of Sciences help to understand why you are chosen and how the choosers make their decisions. ... Read more »
Ben-Jacob E, & Schultz D. (2010) Bacteria determine fate by playing dice with controlled odds. Proceedings of the National Academy of Sciences of the United States of America, 107(30), 13197-8. PMID: 20660309
Andrew K. Benson,, Scott A. Kelly,, Ryan Legge,, Fangrui Ma,, Soo Jen Low,, Jaehyoung Kim,, Min Zhang,, Phaik Lyn Oh,, Derrick Nehrenberg,, Kunjie Hu,.... (2010) Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors . PNAS. info:/
by Aurametrix team in Health Technologies
I am typing this standing in front of my computer. My tall chair is aside. About a year ago I discovered that life is better if I stand while working some of the time. Then I found out that other people discovered it too, and more keep discovering. We hear it often: eat less and exercise. But this may not be enough. As shown in a recent study, exercise does not counteract the ill effects of sedentary lives, we should keep moving throughout the day too. New York Times article about the study (The men who stare at screens) immediately got up-votes from over 100 hackers - the men who stare at screens to write software, along with 100 comments from those staring at screens to read the news. Stand up while you read this, asked NYT earlier this year. Prolonged sedentarity affects not only cardiovascular and metabolic health, blood clotting, diabetes and cancer. Countless hours of sitting could cause many other ailments reducing the quality of life such as skewed microbial ecology accompanied by strong body odor. Health promotion efforts targeting physical inactivity should emphasize both reducing sedentary activity and increasing regular physical activity for optimal health. The lead author of the 2010 study says: "Stand up. Pace around your office. Get off the couch and grab a mop or change a light bulb the next time you watch ‘‘Dancing With the Stars.’’Stand-up desks and treadmill desk were available years ago, a web site just stand was created for office workers who sit long hours each day, but either the desks are not very usable yet, lobbying your boss for a stand-up workstation is still tricky or most people just like sitting too much. Let's hope this will change. ReferencesWarren TY, Barry V, Hooker SP, Sui X, Church TS, & Blair SN (2010). Sedentary behaviors increase risk of cardiovascular disease mortality in men. Medicine and science in sports and exercise, 42 (5), 879-85 PMID: 19996993 DOI: 10.1249/MSS.0b013e3181c3aa7eDunstan DW, Barr EL, Healy GN, Salmon J, Shaw JE, Balkau B, Magliano DJ, Cameron AJ, Zimmet PZ, & Owen N (2010). Television viewing time and mortality: the Australian Diabetes, Obesity and Lifestyle Study (AusDiab). Circulation, 121 (3), 384-91 PMID: 20065160 DOI: 10.1161/CIRCULATIONAHA.109.894824Katzmarzyk PT, Church TS, Craig CL, & Bouchard C (2009). Sitting time and mortality from all causes, cardiovascular disease, and cancer. Medicine and science in sports and exercise, 41 (5), 998-1005 PMID: 19346988 DOI: 10.1249/MSS.0b013e3181930355Healy GN, Dunstan DW, Salmon J, Shaw JE, Zimmet PZ, Owen N. (2008). Television time and continuous metabolic risk in physically active adults. Medicine and Science in Sports and Exercise 40, 639-645.(PMID: 18317383) Khaw K-T, Wareham N, Bingham S, Welch A, Luben R, et al. (2008) Combined Impact of Health Behaviours and Mortality in Men and Women: The EPIC-Norfolk Prospective Population Study. PLoS Med 5(1): e12. doi:10.1371/journal.pmed.0050012 (PMID: 18184033)Beasley R, Raymond N, Hill S, Nowitz M, Hughes R. (2003) eThrombosis: the 21st century variant of venous thromboembolism associated with immobility. Eur Respir J. 21(2), 374-6. (PMID: 12608454... Read more »
WARREN, T., BARRY, V., HOOKER, S., SUI, X., CHURCH, T., & BLAIR, S. (2010) Sedentary Behaviors Increase Risk of Cardiovascular Disease Mortality in Men. Medicine , 42(5), 879-885. DOI: 10.1249/MSS.0b013e3181c3aa7e
Dunstan, D., Barr, E., Healy, G., Salmon, J., Shaw, J., Balkau, B., Magliano, D., Cameron, A., Zimmet, P., & Owen, N. (2010) Television Viewing Time and Mortality: The Australian Diabetes, Obesity and Lifestyle Study (AusDiab). Circulation, 121(3), 384-391. DOI: 10.1161/CIRCULATIONAHA.109.894824
Katzmarzyk PT, Church TS, Craig CL, & Bouchard C. (2009) Sitting time and mortality from all causes, cardiovascular disease, and cancer. Medicine and science in sports and exercise, 41(5), 998-1005. PMID: 19346988
KATZMARZYK, P., CHURCH, T., CRAIG, C., & BOUCHARD, C. (2009) Sitting Time and Mortality from All Causes, Cardiovascular Disease, and Cancer. Medicine , 41(5), 998-1005. DOI: 10.1249/MSS.0b013e3181930355
by Aurametrix team in Irritable Bowel Blog
Want to manage your toilet metrics? There's an app for that. Actually, multiple apps - like this one recording precise GPS location of bowel events along with their shapes and odors or IBS symptom tracker and GI monitor, approved and designed by gastroenterologists. Yet, the lists of metrics provided by these applications are not complete - no options to record color, consistency, texture, effort... And what about total time spent? According to IBS forums, it could range from seconds to ... "long enough to play a full game of Scrabble". An Israeli scientist (Sikirov, 2003) found that times "needed for sensation of satisfactory emptying" range from 50 to 130 seconds for healthy volunteers. He plotted time and effort vs the height of toilet (41cm or 16-inch-high, 31cm or 12-inch-high toilet, and a plastic container) and found notable correlations - the shorter the better. US team (Rao et al, 2006) evaluated internal pressures of subjects with a water-filled balloon or silicone-stool in their rectum, rating their stooling sensation. As one could guess, silicone was more pleasurable and sitting was better than lying flat. Japanese scientists (Sakakibara et al, 2010) measured hip flexon vs angularity of the rectoanal canal and recorded abdominal pressure. Their conclusion was that squatting helps. This is in line with observations by IBS sufferers: like this one about getting down on hands and knees and rubbing the floor with head before going to bathroom. or keeping knees elevated by placing feet on a footstool. Daniel Lametti who wrote this well-researched article for Slate (Not a bunch of Internet quackery!) conducted his own squatting experiment - each morning for a week, following a bowl of corn flakes and a cup of coffee . As his 10-minute routine dropped to a minute, he was able to free an hour per week for more productive work.The moral of the story is that we need not only switch to stand-up desks for work, but also to better-designed toilets - like this one from Japan, adjustable to several different squatting and sitting postures. Perhaps one day such toilets will make a splash in other parts of the world.ReferencesSikirov D (2003). Comparison of straining during defecation in three positions: results and implications for human health. Digestive diseases and sciences, 48 (7), 1201-5 PMID: 12870773Rao SS, Kavlock R, & Rao S (2006). Influence of body position and stool characteristics on defecation in humans. The American journal of gastroenterology, 101 (12), 2790-6 PMID: 17026568Ryuji Sakakibara, Kuniko Tsunoyama, Hiroyasu Hosol, Osamu Takahashi, Megumi Sugiyama, Masahiko Kishi, Emina Ogawa, Hitoshi Terada, Tomoyuki Uchiyama, & Tomonori Yamanishi (2010). Influence of Body Position on Defecation in Humans. LUTS: Lower Urinary Tract Symptoms, 2 (1), 16-21... Read more »
Sikirov D. (2003) Comparison of straining during defecation in three positions: results and implications for human health. Digestive diseases and sciences, 48(7), 1201-5. PMID: 12870773
Rao SS, Kavlock R, & Rao S. (2006) Influence of body position and stool characteristics on defecation in humans. The American journal of gastroenterology, 101(12), 2790-6. PMID: 17026568
Ryuji SAKAKIBARA, Kuniko TSUNOYAMA, Hiroyasu HOSOI, Osamu TAKAHASHI, Megumi SUGIYAMA, Masahiko KISHI, Emina OGAWA, Hitoshi TERADA, Tomoyuki UCHIYAMA, & Tomonori YAMANISHI. (2010) Influence of Body Position on Defecation in Humans. . LUTS: Lower Urinary Tract Symptoms, 2(1), 16-21. DOI: 10.1111/j.1757-5672.2009.00057.x
by Aurametrix team in Olfactics and Diagnostics
Unpleasant body odors could be a sign of a disease. But even when the cause of the disease is known - an example is trimethylaminuria or TMAU - there are no one-size-fits-all solutions. Elimination of choline and other essential nutrients from diet can be harmful and unhelpful. Everyone has their own unique needs, with individual combinations of foods, activities and optimal environmental conditions.An earlier survey of about 100 body odor and halitosis sufferers indicated stress (34%), food (25%) and environment, including the weather and perfumed products (15%) as main triggers of odors. 23% of sufferers did not know what the trigger was.Our study seems to have less unknowns. As you see from the picture, 60% of participants have both body odor and halitosis. Only 22% of participants were diagnosed with TMAU, one third has IBS, one third has environmental sensitivities (mostly pollen and mold allergies, but some have dust mite and pet allergies and chemical sensitivities). Over 60% of participants reported sensitivities to specific foods. Most frequent was lactose sensitivity.It is known that a specific diet, infections and diseases have major impact on variations in human body odor. Some of our early results on fatty and ammonia types of odors identified a few food ingredients and their maldigestion as potential causes. Our next posts on musty and smoky odors, as well as unpleasant odors in general will tell more. But to get a better picture and to connect the dots, we need more responses. Click here to take surveyor e-mail to aurametrix.mebo@meboresearch.org for more informationAnd stay tuned for results! REFERENCESJan Havlicek, & Pavlina Lenochova (2008). Environmental effects on human body odour Chemical Signals in Vertebrates DOI: 10.1007/978-0-387-73945-8_19Havlicek, J., & Lenochova, P. (2006). The Effect of Meat Consumption on Body Odor Attractiveness Chemical Senses, 31 (8), 747-752 DOI: 10.1093/chemse/bjl017... Read more »
Jan Havlicek, & Pavlina Lenochova. (2008) Environmental effects on human body odour. Chemical Signals in Vertebrates. DOI: 10.1007/978-0-387-73945-8_19
Havlicek, J., & Lenochova, P. (2006) The Effect of Meat Consumption on Body Odor Attractiveness. Chemical Senses, 31(8), 747-752. DOI: 10.1093/chemse/bjl017
by Aurametrix team in Health Technologies
Microbes give us the great variety of tasty food, but not all of them are harmless. Genome sequencing of microorganisms started to bring practical benefits to the field of microbial food safety. The technology is still not as readily available and inexpensive as needed for practical applications, but a few pilot projects have showed a promise. ... Read more »
Ward TJ, Evans P, Wiedmann M, Usgaard T, Roof SE, Stroika SG, & Hise K. (2010) Molecular and phenotypic characterization of Listeria monocytogenes from U.S. Department of Agriculture Food Safety and Inspection Service surveillance of ready-to-eat foods and processing facilities. Journal of food protection, 73(5), 861-9. PMID: 20501037
Van Stelten A, Simpson JM, Ward TJ, & Nightingale KK. (2010) Revelation by single-nucleotide polymorphism genotyping that mutations leading to a premature stop codon in inlA are common among Listeria monocytogenes isolates from ready-to-eat foods but not human listeriosis cases. Applied and environmental microbiology, 76(9), 2783-90. PMID: 20208021
St-Gelais D, Lessard J, Champagne CP, & Vuillemard JC. (2009) Production of fresh Cheddar cheese curds with controlled postacidification and enhanced flavor. Journal of dairy science, 92(5), 1856-63. PMID: 19389943
by Aurametrix team in Olfactics and Diagnostics
Body odor is closely associated with diet. Deciphering the chemistry of human odor is not an easy task. Fortunately for some (and not so fortunately for others), the human nose can capture and discriminate many smell signatures. Could this discrimination be used to connect the dots between diet and body odor? MEBO Research has just started an anonymous study using the Aurametrix health analysis tool to find out.... Read more »
Bolton B, & Halpern BP. (2010) Orthonasal and retronasal but not oral-cavity-only discrimination of vapor-phase fatty acids. Chemical senses, 35(3), 229-38. PMID: 20100787
Dunkel M, Schmidt U, Struck S, Berger L, Gruening B, Hossbach J, Jaeger IS, Effmert U, Piechulla B, Eriksson R.... (2009) SuperScent--a database of flavors and scents. Nucleic acids research, 37(Database issue). PMID: 18931377
by Aurametrix team in Irritable Bowel Blog
A number of studies have suggested that a higher intake of lycopene-containing foods decreases the risk of heart disease, prostate cancer, other cancers and infections, even cataracts and asthma. What are the potential side effects?... Read more »
Jatoi A, Burch P, Hillman D, Vanyo JM, Dakhil S, Nikcevich D, Rowland K, Morton R, Flynn PJ, Young C.... (2007) A tomato-based, lycopene-containing intervention for androgen-independent prostate cancer: results of a Phase II study from the North Central Cancer Treatment Group. Urology, 69(2), 289-94. PMID: 17320666
by Aurametrix team in Olfactics and Diagnostics
Why do I smell like Ammonia? This question, in thousands of variations, has been asked over and over again at every major question/answer site, especially teen, bodybuilding and athletic forums.The Internet provides plenty of opinions.Medical sites talk about diseases like chronic kidney failure, hepatic cirrhosis or H. pylori infection. Fitness sites recommend drinking more water, reevaluating protein sources and eating more carbohydrates. What are these diet-odor links? And what's the Science? Ammonia may be formed during the alkaline hydrolysis and deamidation of proteins - by our own metabolism and the metabolism of microbes that call us home. If our kidneys can't handle the load of nitrogen, it's excreted as ammonia in sweat. Excretion increases 10 times as temperature goes from 70 to 100 Fahrenheit.Aurametrix is a breakthrough analysis tool that correlates users' actions and reactions based on what information they enter into the system. Preliminary correlations in the Aurametrix knowledge base show exactly what's expected: excess protein does lead to ammonia-like odor.But wait a minute - does it say the same about excess fat? An example provided by one of our users is very interesting. The user logged a few foods he thought were contributing to odor. These were different odors according to the user - ranging from "Ammonia-like" to "Fishy", sharp, cloying and stale. Aurametrix, however, recognized that all these odors described by the user may be related to nitrogen-containing compounds. When these three data points were analyzed along with four foods that the user did not associate with any odors, Aurametrix displayed only one result:Based on your Aura entries, the following may be contributing to "Ammoniacal odor" in a 3 hour timeframe:Hexadecanoic acid (when consumed more than 0.7 grams, up to 1.19)Hexadecanoic acid - commonly known as Palmitic acid - is one of the most common saturated fatty acids in the Western diet. Palm oil and coconut oil contain especially high levels of this acid. What effect does this acid have on metabolism? It down-regulates glycose metabolism and protein metabolism, affecting Calcium or mRNA binding proteins [1]. So there may very well be a connection!Want to connect the dots to your own health and wellbeing and see what you have in common with others?Write to:aurametrix.mebo@meboresearch.orgReferencesHovsepyan, M., Sargsyan, E., & Bergsten, P. (2010). Palmitate-induced changes in protein expression of insulin secreting INS-1E cells Journal of Proteomics, 73 (6), 1148-1155 DOI: 10.1016/j.jprot.2010.01.012Trabue S, Kerr B, Bearson B, Ziemer C. Swine odor analyzed by odor panels and chemical techniques. J Environ Qual. 2011 Sep-Oct;40(5):1510-20.Ito, Shigeji; Kohli, Yoshihiro; Kato, Takuji; Abe, Yoshimichi; Ueda, Takashi Significance of ammonia produced by Helicobacter pylori. European Journal of Gastroenterology & Hepatology. 6(2):167-174, February 1994.Qiu, Y.T., Smallegange, R.C., Van Loon, J.J.A., Takken, W. 2011 Behavioural responses of Anopheles gambiae sensu stricto to components of human breath, sweat and urine depend on mixture composition and concentration. Medical and Veterinary Entomology 25 (3), pp. 247-255 Enrique Wolpert, M.D., Sidney F. Phillips, M.D., and W. H. J. Summerskill, D.M. Ammonia Production in the Human Colon — Effects of Cleansing, Neomycin and Acetohydroxamic Acid N Engl J Med 1970; 283:159-164V Bhatia, R Singh, S K Acharya Liver: Predictive value of arterial ammonia for complications and outcome in acute liver failure. Gut 2006;55:98-104 Published Online First: 15 July 2005 doi:10.1136/gut.2004.061754 Consolazio, C.F., Nelson, R.A., Matoush, L.O., Canham, J.E. Nitrogen excretion in sweat and its relation to nitrogen balance requirements. J Nutr. 1963 Apr; 79:399-406.Ammonia personal care products:After Bite ointmentsHair dyesAmmonia in household products: Ammonia Removing ProductsGlass CleanersKitchen Cleaners... Read more »
Hovsepyan, M., Sargsyan, E., & Bergsten, P. (2010) Palmitate-induced changes in protein expression of insulin secreting INS-1E cells. Journal of Proteomics, 73(6), 1148-1155. DOI: 10.1016/j.jprot.2010.01.012
by Aurametrix team in Health Technologies
Apps, apps and more apps. Software is everything and everything runs on software. Almost every industry in the U.S. has been disrupted by software. The health care field is not one of them. Easily accessible consumer information makes everyone a little bit doctor. Emerging portable diagnostic devices will strengthen the transition. Are we up to it? Not yet. ... Read more »
Archer N, Fevrier-Thomas U, Lokker C, McKibbon KA, & Straus SE. (2011) Personal health records: a scoping review. Journal of the American Medical Informatics Association : JAMIA, 18(4), 515-22. PMID: 21672914
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