Post List

  • January 12, 2010
  • 12:26 AM
  • 1,074 views

Why research articles should be publicly accessible (Shulenburger 2009, PLoS Biology)

by Hannah Waters in Culturing Science – biology as relevant to us earthly beings

I cannot even count the number of times when I have been denied access to a journal article I needed.  Oftentimes, it was while I was working on a paper in college and couldn’t read the paper that all the other scholars cited, or the paper that supported an argument I was trying to make.  [...]... Read more »

  • January 12, 2010
  • 12:00 AM
  • 843 views

Identifying minimum patch sizes for breeding success in birds

by Rob Goldstein in Conservation Maven

A new study illustrates the importance of understanding the minimum patch size that an at-risk bird needs to reproduce. Jerrod Butcher and fellow researchers looked at the effect of habitat patch size on two songbirds in north-central Texas.... Read more »

  • January 11, 2010
  • 10:45 PM
  • 1,337 views

Computer-assisted killing for conservation

by CJA Bradshaw in ConservationBytes

Many non-Australians might not know it, but Australia is overrun with feral vertebrates (not to mention weeds and invertebrates). We have millions of pigs, dogs, camels, goats, buffalo, deer, rabbits, cats, foxes and toads (to name a few). In a continent that separated from Gondwana about 80 million years ago, this allowed a fairly unique [...]... Read more »

C.R. McMahon, B.W. Brook,, N. Collier, & C.J.A. Bradshaw. (2010) Spatially explicit spreadsheet modelling for optimising the efficiency of reducing invasive animal density. Methods in Ecology and Evolution. info:/10.1111/j.2041-210X.2009.00002.x

  • January 11, 2010
  • 04:08 PM
  • 405 views

Not Time of Day for Training but Location Location Location

by mc in begin to dig (b2d)

ResearchBlogging.orgThe question of time of day for training has been asked often. Better to train at night? better to train in the morning? Better for anaerobic? better for aerobic?
Indeed, one of my fave current studies has shown that the circadian clock is threaded right into the muscles - at least of mice... Read more »

  • January 11, 2010
  • 03:30 PM
  • 1,198 views

Two tools for screening risk: STarT Back Tool and Örebro Musculoskeletal Pain Screening Questionnaire

by Bronwyn Thompson in Healthskills: Skills for Healthy Living


I wrote yesterday about the difficulty there is in grouping patients so that the right treatment is given to the right person at the right time. Today’s post coincidentally follows a similar line – two screening tools that discriminate between ‘high risk’ and ‘low risk’ people with low back pain. The value of [...]... Read more »

  • January 11, 2010
  • 02:52 PM
  • 1,147 views

CAPRI or: What is the State of Protein-Protein Docking?

by Nir London in Macromolecular Modeling Blog

This is the first post in a series, summarizing the CAPRI (Critical Assessment of PRediction of Interactions) 4th Evaluation meeting. In this post I'll try to give a more personal perspective of the experiment results, the state and trends of computational protein-protein docking and the vibes behind the scenes. The next posts in the series will shortly summarize select talks from the meeting, kindly provided by the speakers.



... Read more »

  • January 11, 2010
  • 02:10 PM
  • 1,358 views

Citizen Science: all fun and no data? ScienceOnline 2010

by Sandra Porter in Discovering Biology in a Digital World

Do citizen science efforts ever go beyond "feel good" contributions? Do the data get published in peer-reviewed journals?

In an earlier post, I started a list of citizen science projects that allow students to make a contribution. Many commentors are graciously adding to that list and I thank you all! I'm glad to learn there are so many interesting projects and ways for people to get involved. Science is so empowering!

My question today concerns things like outcomes and deliverables. We'd........ Read more »

Sandra Porter and Todd Smith. (2000) Bioinformatics in the Biotechnology Classroom. Journal of Industrial Microbiology and Biotechnology, 314-318. info:/

  • January 11, 2010
  • 01:08 PM
  • 789 views

Half plant, half predator, all wierd.

by Lab Rat in Lab Rat

I was planning on brushing up my knowledge of chloroplasts today, as next week I'm starting a plantsci course for my options lectures, but I got sidetracked by Captain Skellet alerting me to Hatena. I've heard of several organisms containing proto-plasmids; symbiotic chloroplasts which haven't completely been endosymbiosed, but Hatena was a new one so I went to look it up. And I'm very glad I did, because it's pretty amazing.Hatena, taken from the reference. Green blob is the symbiont. Scale bar........ Read more »

  • January 11, 2010
  • 01:07 PM
  • 816 views

Laboratory Notebooks: A thing of the past?

by Susan Steinhardt in BioData Blogs

Laboratory notebooks are essential for reproducing experiments. For years we have been raised in our labs knowing that every action must be written down in our lab notebook.... Read more »

  • January 11, 2010
  • 01:07 PM
  • 802 views

Laboratory Notebooks: A thing of the past?

by Susan Steinhardt in The PostDoc Forum

Laboratory notebooks are essential for reproducing experiments. For years we have been raised in our labs knowing that every action must be written down in our lab notebook.... Read more »

  • January 11, 2010
  • 12:29 PM
  • 561 views

Scientists look to tobacco leaves for biofuel

by Katie Kline in EcoTone

This post was contributed by Piper Corp, ESA Science Policy Analyst
In a recent Plant Biotechnology Journal paper, scientists at Thomas Jefferson University’s Biotechnology Foundation Laboratories say that genetically modified tobacco “has the potential to produce more energy per hectare than any other non-food crop.” 


Tobacco Field in Pinar del Rio, Cuba
Photo Credit: Henryk Kotowski

Biofuel oil is [...]

... Read more »

  • January 11, 2010
  • 12:25 PM
  • 1,406 views

So… Did knuckle walking evolve twice?

by zinjanthropus in A Primate of Modern Aspect

Almost certainly.
We had lots of clues that this was the case before Ardi, but now that we’ve got Ardi- the palmigrade extraordinaire, we know that humans did not go through a knuckle-walking phase, and that chimpanzee knuckle-walking has evolved since the split with our last common ancestor with them.  Which would also means that it [...]... Read more »

  • January 11, 2010
  • 12:05 PM
  • 610 views

Grassland Guardians

by Journal Watch Online in Journal Watch Online

When prairie dogs disappear, invasive shrubs move in

... Read more »

Ceballos, G., Davidson, A., List, R., Pacheco, J., Manzano-Fischer, P., Santos-Barrera, G., & Cruzado, J. (2010) Rapid Decline of a Grassland System and Its Ecological and Conservation Implications. PLoS ONE, 5(1). DOI: 10.1371/journal.pone.0008562  

  • January 11, 2010
  • 12:05 PM
  • 684 views

On evolution of the immune system

by iayork in Mystery Rays from Outer Space


As if understanding this complex evolutionary puzzle were not already sufficiently challenging, we have learned recently that two types of adaptive immune system have evolved in vertebrates: a recently recognized system in jawless vertebrates (hagfish and lamprey) and the more familiar adaptive immune system of jawed vertebrates. … This leads to the conjecture that two [...]... Read more »

Cooper, M., & Herrin, B. (2010) How did our complex immune system evolve?. Nature Reviews Immunology, 10(1), 2-3. DOI: 10.1038/nri2686  

  • January 11, 2010
  • 11:00 AM
  • 1,722 views

Deconstructing Social Darwinism, Part III

by Eric Michael Johnson in The Primate Diaries

Part 1 / Part 2 / Part 3

In Quentin Skinner's celebrated history The Foundations of Modern Political Thought he writes that:

If the history of political theory were to be written essentially as a history of ideologies, one outcome might be a clearer understanding of the links between political theory and practice.

In Part II of this series I highlighted how a common objection to the political theory of social Darwinism is that it was a misapplication of Darwin's science to already existing id........ Read more »

  • January 11, 2010
  • 09:59 AM
  • 963 views

Summary: Grassman & Tomasello (2010)

by Sean Roberts in The Adventures of Auck

Grassman & Tomasello (2010) question the findings of Jaswal & Hansen (2006), arguing that children primarily use pragmatic cues over linguistic conventions when trying to resolve ambiguities.... Read more »

  • January 11, 2010
  • 09:46 AM
  • 1,170 views

Mutual Exclusivity Diagrams

by Sean Roberts in The Adventures of Auck

Some diagrams of experiments into the Mutual Exclusivity bias in children's word learning.... Read more »

  • January 11, 2010
  • 08:00 AM
  • 818 views

Can rubber bullets rehabilitate a nuisance bear?

by Rob Goldstein in Conservation Maven

Can you change the behavior of a bear that raids campgrounds, nuzzles through trash, or knocks side view mirrors off cars? A new study finds evidence that a method called aversive conditioning can be successful in modifying the behavior of some bears but fully averting conflicts with humans will require changing how people act as well...... Read more »

  • January 11, 2010
  • 07:41 AM
  • 567 views

Some Like It Hot

by Brian Koberlein in Upon Reflection

Figure 1: Sir Charles Blagden. (Source: Wikipedia) We humans are warm blooded creatures. This mammalian characteristic helps us to live in a range of environments from warm to cold, but it also means our bodies must have a way to...... Read more »

  • January 11, 2010
  • 04:59 AM
  • 1,282 views

Abscisic Acid: Entity of the Month

by Duncan Hull in O'Really?

Happy New Year from the ChEBI team where release 64 is now available, containing 534,142 total entities, of which 19,645 are annotated entities and 693 were submitted via the ChEBI submission tool. This month’s entity of the month is Abscisic acid.
(+)-Abscisic acid (CHEBI:2365), known commonly just as abscisic acid or ABA, is a ubiquitous isoprenoid [...]... Read more »

Sheard, L., & Zheng, N. (2009) Plant biology: Signal advance for abscisic acid. Nature, 462(7273), 575-576. DOI: 10.1038/462575a  

Melcher, K., Ng, L., Zhou, X., Soon, F., Xu, Y., Suino-Powell, K., Park, S., Weiner, J., Fujii, H., Chinnusamy, V.... (2009) A gate–latch–lock mechanism for hormone signalling by abscisic acid receptors. Nature, 462(7273), 602-608. DOI: 10.1038/nature08613  

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